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BioLiP
Download all results in tab-seperated text for 34 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7pf2:A (5.1) BS01 dna ? GO:0000786 ... Q71DI3 35581345
    2 7pf2:A (5.1) BS02 dna ? GO:0000786 ... Q71DI3 35581345
    3 7pf2:B (5.1) BS01 dna ? GO:0000781 ... P62805 35581345
    4 7pf2:B (5.1) BS02 dna ? GO:0000781 ... P62805 35581345
    5 7pf2:C (5.1) BS01 dna ? GO:0000786 ... P04908 35581345
    6 7pf2:C (5.1) BS02 dna ? GO:0000786 ... P04908 35581345
    7 7pf2:D (5.1) BS01 dna ? GO:0000786 ... O60814 35581345
    8 7pf2:D (5.1) BS02 dna ? GO:0000786 ... O60814 35581345
    9 7pf2:E (5.1) BS01 dna ? GO:0000786 ... Q71DI3 35581345
    10 7pf2:E (5.1) BS02 dna ? GO:0000786 ... Q71DI3 35581345
    11 7pf2:F (5.1) BS01 dna ? GO:0000781 ... P62805 35581345
    12 7pf2:F (5.1) BS02 dna ? GO:0000781 ... P62805 35581345
    13 7pf2:G (5.1) BS01 dna ? GO:0000786 ... P04908 35581345
    14 7pf2:G (5.1) BS02 dna ? GO:0000786 ... P04908 35581345
    15 7pf2:H (5.1) BS01 dna ? GO:0000786 ... O60814 35581345
    16 7pf2:H (5.1) BS02 dna ? GO:0000786 ... O60814 35581345
    17 7pf2:K (5.1) BS01 dna ? GO:0000786 ... Q71DI3 35581345
    18 7pf2:K (5.1) BS02 dna ? GO:0000786 ... Q71DI3 35581345
    19 7pf2:L (5.1) BS01 dna ? GO:0000781 ... P62805 35581345
    20 7pf2:L (5.1) BS02 dna ? GO:0000781 ... P62805 35581345
    21 7pf2:M (5.1) BS01 dna ? GO:0000786 ... P04908 35581345
    22 7pf2:M (5.1) BS02 dna ? GO:0000786 ... P04908 35581345
    23 7pf2:N (5.1) BS01 dna ? GO:0000786 ... O60814 35581345
    24 7pf2:N (5.1) BS02 dna ? GO:0000786 ... O60814 35581345
    25 7pf2:O (5.1) BS01 dna ? GO:0000786 ... Q71DI3 35581345
    26 7pf2:O (5.1) BS02 dna ? GO:0000786 ... Q71DI3 35581345
    27 7pf2:P (5.1) BS01 dna ? GO:0000781 ... P62805 35581345
    28 7pf2:P (5.1) BS02 dna ? GO:0000781 ... P62805 35581345
    29 7pf2:Q (5.1) BS01 dna ? GO:0000786 ... P04908 35581345
    30 7pf2:Q (5.1) BS02 dna ? GO:0000786 ... P04908 35581345
    31 7pf2:R (5.1) BS01 dna ? GO:0000786 ... O60814 35581345
    32 7pf2:R (5.1) BS02 dna ? GO:0000786 ... O60814 35581345
    33 7pf2:U (5.1) BS01 dna ? GO:0000122 ... P10412 35581345
    34 7pf2:U (5.1) BS02 dna ? GO:0000122 ... P10412 35581345
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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