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BioLiP
Download all results in tab-seperated text for 94 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7pd3:0 (3.4) BS01 rna ? GO:0003723 ... Q9BYC8 34609277
    2 7pd3:0 (3.4) BS02 ZN ? GO:0003723 ... Q9BYC8 34609277
    3 7pd3:0 (3.4) BS03 U ? GO:0003723 ... Q9BYC8 34609277
    4 7pd3:1 (3.4) BS01 rna ? GO:0003735 ... O75394 34609277
    5 7pd3:2 (3.4) BS01 rna ? GO:0003735 ... Q9BQ48 34609277
    6 7pd3:3 (3.4) BS01 rna ? GO:0003735 ... Q9NZE8 34609277
    7 7pd3:4 (3.4) BS01 rna ? GO:0003735 ... Q9P0J6 34609277
    8 7pd3:4 (3.4) BS02 ZN ? GO:0003735 ... Q9P0J6 34609277
    9 7pd3:4 (3.4) BS03 U ? GO:0003735 ... Q9P0J6 34609277
    10 7pd3:4 (3.4) BS04 C ? GO:0003735 ... Q9P0J6 34609277
    11 7pd3:5 (3.4) BS01 rna ? GO:0003723 ... Q9BZE1 34609277
    12 7pd3:6 (3.4) BS01 rna ? GO:0005515 ... Q96DV4 34609277
    13 7pd3:6 (3.4) BS02 rna ? GO:0005515 ... Q96DV4 34609277
    14 7pd3:8 (3.4) BS01 rna ? GO:0003723 ... Q9NQ50 34609277
    15 7pd3:9 (3.4) BS01 rna ? GO:0003723 ... Q8IXM3 34609277
    16 7pd3:D (3.4) BS01 rna ? GO:0003723 ... Q5T653 34609277
    17 7pd3:E (3.4) BS01 rna ? GO:0003723 ... P09001 34609277
    18 7pd3:E (3.4) BS02 U ? GO:0003723 ... P09001 34609277
    19 7pd3:E (3.4) BS03 A ? GO:0003723 ... P09001 34609277
    20 7pd3:E (3.4) BS04 U ? GO:0003723 ... P09001 34609277
    21 7pd3:E (3.4) BS05 C ? GO:0003723 ... P09001 34609277
    22 7pd3:E (3.4) BS06 U ? GO:0003723 ... P09001 34609277
    23 7pd3:E (3.4) BS07 A ? GO:0003723 ... P09001 34609277
    24 7pd3:E (3.4) BS08 C ? GO:0003723 ... P09001 34609277
    25 7pd3:E (3.4) BS09 U ? GO:0003723 ... P09001 34609277
    26 7pd3:E (3.4) BS10 C ? GO:0003723 ... P09001 34609277
    27 7pd3:E (3.4) BS11 U ? GO:0003723 ... P09001 34609277
    28 7pd3:E (3.4) BS12 C ? GO:0003723 ... P09001 34609277
    29 7pd3:E (3.4) BS13 A ? GO:0003723 ... P09001 34609277
    30 7pd3:E (3.4) BS14 C ? GO:0003723 ... P09001 34609277
    31 7pd3:E (3.4) BS15 C ? GO:0003723 ... P09001 34609277
    32 7pd3:E (3.4) BS16 C ? GO:0003723 ... P09001 34609277
    33 7pd3:E (3.4) BS17 A ? GO:0003723 ... P09001 34609277
    34 7pd3:E (3.4) BS18 A ? GO:0003723 ... P09001 34609277
    35 7pd3:E (3.4) BS19 A ? GO:0003723 ... P09001 34609277
    36 7pd3:E (3.4) BS20 G ? GO:0003723 ... P09001 34609277
    37 7pd3:E (3.4) BS21 U ? GO:0003723 ... P09001 34609277
    38 7pd3:E (3.4) BS22 U ? GO:0003723 ... P09001 34609277
    39 7pd3:F (3.4) BS01 rna ? GO:0003723 ... Q9BYD3 34609277
    40 7pd3:F (3.4) BS02 MG ? GO:0003723 ... Q9BYD3 34609277
    41 7pd3:G (3.4) BS01 rna ? GO:0003723 ... Q7Z7H8 34609277
    42 7pd3:G (3.4) BS02 peptide ? GO:0003723 ... Q7Z7H8 34609277
    43 7pd3:H (3.4) BS01 rna ? GO:0003723 ... Q9BYD2 34609277
    44 7pd3:J (3.4) BS01 rna ? GO:0003723 ... Q9Y3B7 34609277
    45 7pd3:K (3.4) BS01 rna ? GO:0003723 ... Q9BYD1 34609277
    46 7pd3:L (3.4) BS01 rna ? GO:0003723 ... Q6P1L8 34609277
    47 7pd3:L (3.4) BS02 A ? GO:0003723 ... Q6P1L8 34609277
    48 7pd3:L (3.4) BS03 U ? GO:0003723 ... Q6P1L8 34609277
    49 7pd3:M (3.4) BS01 rna ? GO:0003723 ... Q9P015 34609277
    50 7pd3:N (3.4) BS01 rna ? GO:0003735 ... Q9NX20 34609277
    51 7pd3:N (3.4) BS02 peptide ? GO:0003735 ... Q9NX20 34609277
    52 7pd3:O (3.4) BS01 rna ? GO:0003735 ... Q9NRX2 34609277
    53 7pd3:O (3.4) BS02 A ? GO:0003735 ... Q9NRX2 34609277
    54 7pd3:P (3.4) BS01 rna ? GO:0003723 ... Q9H0U6 34609277
    55 7pd3:P (3.4) BS02 rna ? GO:0003723 ... Q9H0U6 34609277
    56 7pd3:Q (3.4) BS01 rna ? GO:0003735 ... P49406 34609277
    57 7pd3:Q (3.4) BS02 C ? GO:0003735 ... P49406 34609277
    58 7pd3:Q (3.4) BS03 C ? GO:0003735 ... P49406 34609277
    59 7pd3:R (3.4) BS01 rna ? GO:0003723 ... Q9BYC9 34609277
    60 7pd3:S (3.4) BS01 rna ? GO:0003723 ... Q7Z2W9 34609277
    61 7pd3:T (3.4) BS01 rna ? GO:0003723 ... Q9NWU5 34609277
    62 7pd3:U (3.4) BS01 rna ? GO:0001650 ... Q16540 34609277
    63 7pd3:V (3.4) BS01 rna ? GO:0003723 ... Q96A35 34609277
    64 7pd3:W (3.4) BS01 rna ? GO:0003723 ... Q9P0M9 34609277
    65 7pd3:X (3.4) BS01 rna ? GO:0003723 ... Q13084 34609277
    66 7pd3:Y (3.4) BS01 rna ? GO:0003674 ... Q9HD33 34609277
    67 7pd3:Z (3.4) BS01 rna ? GO:0003735 ... Q8TCC3 34609277
    68 7pd3:a (3.4) BS01 rna ? GO:0003723 ... Q9Y6G3 34609277
    69 7pd3:b (3.4) BS01 rna ? GO:0003723 ... Q8N983 34609277
    70 7pd3:c (3.4) BS01 rna 3.1.26.- GO:0003723 ... Q9H9J2 34609277
    71 7pd3:d (3.4) BS01 rna ? GO:0003723 ... Q9BRJ2 34609277
    72 7pd3:f (3.4) BS01 rna ? GO:0005515 ... Q96GC5 34609277
    73 7pd3:f (3.4) BS02 rna ? GO:0005515 ... Q96GC5 34609277
    74 7pd3:g (3.4) BS01 rna ? GO:0003735 ... Q13405 34609277
    75 7pd3:i (3.4) BS01 rna ? GO:0003735 ... Q4U2R6 34609277
    76 7pd3:j (3.4) BS01 rna ? GO:0003735 ... Q86TS9 34609277
    77 7pd3:o (3.4) BS01 rna ? GO:0003735 ... Q9BQC6 34609277
    78 7pd3:o (3.4) BS02 MG ? GO:0003735 ... Q9BQC6 34609277
    79 7pd3:r (3.4) BS01 rna ? GO:0003735 ... Q9NVS2 34609277
    80 7pd3:r (3.4) BS02 A ? GO:0003735 ... Q9NVS2 34609277
    81 7pd3:r (3.4) BS03 U ? GO:0003735 ... Q9NVS2 34609277
    82 7pd3:r (3.4) BS04 A ? GO:0003735 ... Q9NVS2 34609277
    83 7pd3:r (3.4) BS05 C ? GO:0003735 ... Q9NVS2 34609277
    84 7pd3:r (3.4) BS06 A ? GO:0003735 ... Q9NVS2 34609277
    85 7pd3:r (3.4) BS07 A ? GO:0003735 ... Q9NVS2 34609277
    86 7pd3:s (3.4) BS01 rna ? GO:0003723 ... Q9NP92 34609277
    87 7pd3:u (3.4) BS01 C ? GO:0005515 ... Q96EH3 34609277
    88 7pd3:u (3.4) BS02 G ? GO:0005515 ... Q96EH3 34609277
    89 7pd3:v (3.4) BS01 PNS ? GO:0000266 ... L0R8F8 34609277
    90 7pd3:x (3.4) BS01 rna 2.1.1.- GO:0001510 ... Q96CB9 34609277
    91 7pd3:x (3.4) BS02 SAM 2.1.1.- GO:0001510 ... Q96CB9 34609277
    92 7pd3:y (3.4) BS01 rna ? GO:0003690 ... Q7Z6M4 34609277
    93 7pd3:z (3.4) BS01 rna ? GO:0003924 ... Q9BT17 34609277
    94 7pd3:z (3.4) BS02 U ? GO:0003924 ... Q9BT17 34609277
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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