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BioLiP
Download all results in tab-seperated text for 104 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7oyc:11 (2.4) BS01 rna ? GO:0003723 ... Q7ZXG3 36653451
    2 7oyc:A1 (2.4) BS01 rna N/A GO:0003723 ... N/A 36653451
    3 7oyc:A1 (2.4) BS02 MG N/A GO:0003723 ... N/A 36653451
    4 7oyc:A2 (2.4) BS01 rna ? GO:0000028 ... Q7ZX07 36653451
    5 7oyc:B1 (2.4) BS01 rna ? GO:0003723 ... Q7ZYR1 36653451
    6 7oyc:B1 (2.4) BS02 MG ? GO:0003723 ... Q7ZYR1 36653451
    7 7oyc:B2 (2.4) BS01 rna ? GO:0003735 ... Q801S3 36653451
    8 7oyc:C1 (2.4) BS01 rna ? GO:0003723 ... P02385 36653451
    9 7oyc:C1 (2.4) BS02 rna ? GO:0003723 ... P02385 36653451
    10 7oyc:C2 (2.4) BS01 rna ? GO:0003723 ... Q7T0R9 36653451
    11 7oyc:D1 (2.4) BS01 rna ? GO:0000027 ... Q8AVI7 36653451
    12 7oyc:D1 (2.4) BS02 rna ? GO:0000027 ... Q8AVI7 36653451
    13 7oyc:D2 (2.4) BS01 rna 4.2.99.18 GO:0003677 ... Q7ZYT3 36653451
    14 7oyc:E1 (2.4) BS01 rna ? GO:0000027 ... Q6DJF7 36653451
    15 7oyc:E2 (2.4) BS01 rna ? GO:0003723 ... P49401 36653451
    16 7oyc:F1 (2.4) BS01 rna ? GO:0000463 ... Q3B8I3 36653451
    17 7oyc:F1 (2.4) BS02 rna ? GO:0000463 ... Q3B8I3 36653451
    18 7oyc:F2 (2.4) BS01 rna ? GO:0000028 ... A0A1L8F8E2 36653451
    19 7oyc:G1 (2.4) BS01 rna ? GO:0000470 ... Q6GQB2 36653451
    20 7oyc:G1 (2.4) BS02 rna ? GO:0000470 ... Q6GQB2 36653451
    21 7oyc:G2 (2.4) BS01 rna ? GO:0003735 ... Q7ZYU0 36653451
    22 7oyc:H1 (2.4) BS01 rna N/A GO:0003735 ... N/A 36653451
    23 7oyc:H2 (2.4) BS01 rna ? GO:0003735 ... P02362 36653451
    24 7oyc:I1 (2.4) BS01 rna ? GO:0000027 ... A0A1L8F5F1 36653451
    25 7oyc:I1 (2.4) BS02 rna ? GO:0000027 ... A0A1L8F5F1 36653451
    26 7oyc:I2 (2.4) BS01 rna ? GO:0000462 ... Q6DJI0 36653451
    27 7oyc:J1 (2.4) BS01 rna ? GO:0003723 ... A0AA97PZC8 36653451
    28 7oyc:J1 (2.4) BS02 rna ? GO:0003723 ... A0AA97PZC8 36653451
    29 7oyc:J2 (2.4) BS01 rna ? GO:0003723 ... Q7ZYU4 36653451
    30 7oyc:K2 (2.4) BS01 rna ? GO:0003723 ... Q07254 36653451
    31 7oyc:L1 (2.4) BS01 rna ? GO:0003723 ... Q6DJN5 36653451
    32 7oyc:L1 (2.4) BS02 rna ? GO:0003723 ... Q6DJN5 36653451
    33 7oyc:L2 (2.4) BS01 rna ? GO:0003735 ... Q7SZ77 36653451
    34 7oyc:M1 (2.4) BS01 rna ? GO:0003723 ... A0A1L8FWH1 36653451
    35 7oyc:N1 (2.4) BS01 rna ? GO:0002181 ... A0A1L8FRG2 36653451
    36 7oyc:N1 (2.4) BS02 rna ? GO:0002181 ... A0A1L8FRG2 36653451
    37 7oyc:N2 (2.4) BS01 rna ? GO:0003735 ... P49393 36653451
    38 7oyc:N2 (2.4) BS02 rna ? GO:0003735 ... P49393 36653451
    39 7oyc:O1 (2.4) BS01 rna ? GO:0003729 ... A0A1L8ENM5 36653451
    40 7oyc:O2 (2.4) BS01 rna N/A GO:0003735 ... N/A 36653451
    41 7oyc:P1 (2.4) BS01 rna ? GO:0002181 ... A0A1L8I3J8 36653451
    42 7oyc:P1 (2.4) BS02 rna ? GO:0002181 ... A0A1L8I3J8 36653451
    43 7oyc:P2 (2.4) BS01 rna ? GO:0000028 ... P20342 36653451
    44 7oyc:Q1 (2.4) BS01 rna N/A GO:0003735 ... N/A 36653451
    45 7oyc:Q2 (2.4) BS01 rna ? GO:0000462 ... Q3KQC9 36653451
    46 7oyc:R1 (2.4) BS01 rna ? GO:0003723 ... Q7ZYS1 36653451
    47 7oyc:R1 (2.4) BS02 rna ? GO:0003723 ... Q7ZYS1 36653451
    48 7oyc:R2 (2.4) BS01 rna ? GO:0003735 ... Q6GNF4 36653451
    49 7oyc:S1 (2.4) BS01 rna ? GO:0003735 ... Q7SZB7 36653451
    50 7oyc:S1 (2.4) BS02 rna ? GO:0003735 ... Q7SZB7 36653451
    51 7oyc:S2 (2.4) BS01 rna ? GO:0003676 ... Q6NTT2 36653451
    52 7oyc:T1 (2.4) BS01 rna ? GO:0003735 ... Q6GP41 36653451
    53 7oyc:T1 (2.4) BS02 rna ? GO:0003735 ... Q6GP41 36653451
    54 7oyc:T2 (2.4) BS01 rna ? GO:0003735 ... A0A310TRG4 36653451
    55 7oyc:U1 (2.4) BS01 rna ? GO:0002181 ... P50886 36653451
    56 7oyc:U2 (2.4) BS01 rna ? GO:0003723 ... P23403 36653451
    57 7oyc:V1 (2.4) BS01 rna ? GO:0003735 ... Q6GNH1 36653451
    58 7oyc:V1 (2.4) BS02 rna ? GO:0003735 ... Q6GNH1 36653451
    59 7oyc:W1 (2.4) BS01 rna ? GO:0002181 ... A0A1L8HGE0 36653451
    60 7oyc:W2 (2.4) BS01 rna ? GO:0003735 ... Q4QR44 36653451
    61 7oyc:X1 (2.4) BS01 rna ? GO:0000027 ... A0A1L8H4S4 36653451
    62 7oyc:X1 (2.4) BS02 rna ? GO:0000027 ... A0A1L8H4S4 36653451
    63 7oyc:X2 (2.4) BS01 rna ? GO:0003735 ... Q6AZL9 36653451
    64 7oyc:Y1 (2.4) BS01 rna N/A GO:0003723 ... N/A 36653451
    65 7oyc:Y1 (2.4) BS02 rna N/A GO:0003723 ... N/A 36653451
    66 7oyc:Y2 (2.4) BS01 rna ? GO:0003735 ... P02377 36653451
    67 7oyc:Z1 (2.4) BS01 rna ? GO:0003735 ... Q6PHL5 36653451
    68 7oyc:Z2 (2.4) BS01 rna ? GO:0003735 ... Q6DJJ1 36653451
    69 7oyc:a1 (2.4) BS01 rna ? GO:0003735 ... Q7SZB2 36653451
    70 7oyc:a2 (2.4) BS01 rna ? GO:0003729 ... Q6AZL7 36653451
    71 7oyc:a2 (2.4) BS02 ZN ? GO:0003729 ... Q6AZL7 36653451
    72 7oyc:b1 (2.4) BS01 rna ? GO:0002181 ... Q66KW1 36653451
    73 7oyc:b2 (2.4) BS01 rna ? GO:0000028 ... A0A1L8EJM5 36653451
    74 7oyc:c1 (2.4) BS01 rna ? GO:0003723 ... Q7SZC0 36653451
    75 7oyc:c2 (2.4) BS01 rna ? GO:0000028 ... Q66KP7 36653451
    76 7oyc:d1 (2.4) BS01 rna ? GO:0002181 ... Q6NUH0 36653451
    77 7oyc:d2 (2.4) BS01 rna N/A GO:0003723 ... N/A 36653451
    78 7oyc:d2 (2.4) BS02 ZN N/A GO:0003723 ... N/A 36653451
    79 7oyc:e1 (2.4) BS01 rna ? GO:0003735 ... A0A1L8GHL2 36653451
    80 7oyc:e2 (2.4) BS01 rna ? GO:0003735 ... Q4KLF0 36653451
    81 7oyc:f1 (2.4) BS01 rna ? GO:0000049 ... P02434 36653451
    82 7oyc:g1 (2.4) BS01 rna ? GO:0003735 ... A0A1L8HUR4 36653451
    83 7oyc:g1 (2.4) BS02 ZN ? GO:0003735 ... A0A1L8HUR4 36653451
    84 7oyc:g2 (2.4) BS01 rna ? GO:0001934 ... Q8AVP6 36653451
    85 7oyc:h1 (2.4) BS01 rna ? GO:0000463 ... Q4FZQ7 36653451
    86 7oyc:h1 (2.4) BS02 rna ? GO:0000463 ... Q4FZQ7 36653451
    87 7oyc:i1 (2.4) BS01 rna ? GO:0002181 ... Q66KU4 36653451
    88 7oyc:i2 (2.4) BS01 rna N/A GO:0003723 ... N/A 36653451
    89 7oyc:j1 (2.4) BS01 rna ? GO:0003723 ... A0A1L8I2F1 36653451
    90 7oyc:j1 (2.4) BS02 rna ? GO:0003723 ... A0A1L8I2F1 36653451
    91 7oyc:j1 (2.4) BS03 ZN ? GO:0003723 ... A0A1L8I2F1 36653451
    92 7oyc:k1 (2.4) BS01 rna ? GO:0003735 ... Q66KV2 36653451
    93 7oyc:l1 (2.4) BS01 rna ? GO:0003735 ... Q4FZP7 36653451
    94 7oyc:l1 (2.4) BS02 rna ? GO:0003735 ... Q4FZP7 36653451
    95 7oyc:m1 (2.4) BS01 rna ? GO:0003723 ... Q6GQF3 36653451
    96 7oyc:m1 (2.4) BS02 ZN ? GO:0003723 ... Q6GQF3 36653451
    97 7oyc:o1 (2.4) BS01 rna ? GO:0003735 ... Q66KU5 36653451
    98 7oyc:o1 (2.4) BS02 ZN ? GO:0003735 ... Q66KU5 36653451
    99 7oyc:p1 (2.4) BS01 rna ? GO:0003735 ... A0A1L8H102 36653451
    100 7oyc:p1 (2.4) BS02 ZN ? GO:0003735 ... A0A1L8H102 36653451
    101 7oyc:r1 (2.4) BS01 rna ? GO:0003735 ... Q66KV6 36653451
    102 7oyc:s1 (2.4) BS01 rna ? GO:0006417 ... A3KMU5 36653451
    103 7oyc:v2 (2.4) BS01 rna 3.6.5.- GO:0003746 ... Q7ZXP8 36653451
    104 7oyc:v2 (2.4) BS02 rna 3.6.5.- GO:0003746 ... Q7ZXP8 36653451
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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