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BioLiP
Download all results in tab-seperated text for 67 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7oii:B (3.0) BS01 rna ? GO:0003676 ... A0A1H2D2H5 34994471
    2 7oii:C (3.0) BS01 rna ? GO:0000027 ... P60422 34994471
    3 7oii:D (3.0) BS01 rna ? GO:0000027 ... P60438 34994471
    4 7oii:D (3.0) BS02 MG ? GO:0000027 ... P60438 34994471
    5 7oii:E (3.0) BS01 rna ? GO:0001070 ... P60723 34994471
    6 7oii:F (3.0) BS01 rna N/A GO:0003735 ... N/A 34994471
    7 7oii:F (3.0) BS02 rna N/A GO:0003735 ... N/A 34994471
    8 7oii:F (3.0) BS03 rna N/A GO:0003735 ... N/A 34994471
    9 7oii:G (3.0) BS01 rna N/A GO:0003735 ... N/A 34994471
    10 7oii:H (3.0) BS01 rna ? GO:0002181 ... P0A7R1 34994471
    11 7oii:I (3.0) BS01 rna ? GO:0002181 ... P0AA10 34994471
    12 7oii:J (3.0) BS01 rna ? GO:0002181 ... P0ADY3 34994471
    13 7oii:J (3.0) BS02 rna ? GO:0002181 ... P0ADY3 34994471
    14 7oii:K (3.0) BS01 rna ? GO:0002181 ... P02413 34994471
    15 7oii:L (3.0) BS01 rna ? GO:0000027 ... P0ADY7 34994471
    16 7oii:L (3.0) BS02 rna ? GO:0000027 ... P0ADY7 34994471
    17 7oii:M (3.0) BS01 rna N/A GO:0003735 ... N/A 34994471
    18 7oii:N (3.0) BS01 rna N/A GO:0003735 ... N/A 34994471
    19 7oii:N (3.0) BS02 rna N/A GO:0003735 ... N/A 34994471
    20 7oii:O (3.0) BS01 rna N/A GO:0003735 ... N/A 34994471
    21 7oii:O (3.0) BS02 rna N/A GO:0003735 ... N/A 34994471
    22 7oii:P (3.0) BS01 rna N/A GO:0003735 ... N/A 34994471
    23 7oii:Q (3.0) BS01 rna ? GO:0002181 ... P0AG48 34994471
    24 7oii:R (3.0) BS01 rna ? GO:0002181 ... P61175 34994471
    25 7oii:S (3.0) BS01 rna N/A GO:0003735 ... N/A 34994471
    26 7oii:T (3.0) BS01 rna N/A GO:0003723 ... N/A 34994471
    27 7oii:U (3.0) BS01 rna ? GO:0000027 ... P68919 34994471
    28 7oii:V (3.0) BS01 rna N/A GO:0003735 ... N/A 34994471
    29 7oii:V (3.0) BS02 rna N/A GO:0003735 ... N/A 34994471
    30 7oii:V (3.0) BS03 rna N/A GO:0003735 ... N/A 34994471
    31 7oii:W (3.0) BS01 rna N/A GO:0003735 ... N/A 34994471
    32 7oii:X (3.0) BS01 rna N/A GO:0003735 ... N/A 34994471
    33 7oii:Y (3.0) BS01 rna N/A GO:0003735 ... N/A 34994471
    34 7oii:Z (3.0) BS01 rna ? GO:0003735 ... A0A4P8CB21 34994471
    35 7oii:Z (3.0) BS02 rna ? GO:0003735 ... A0A4P8CB21 34994471
    36 7oii:Z (3.0) BS03 ZN ? GO:0003735 ... A0A4P8CB21 34994471
    37 7oii:a (3.0) BS01 rna N/A GO:0003735 ... N/A 34994471
    38 7oii:b (3.0) BS01 rna ? GO:0003735 ... A0A1X3IVN5 34994471
    39 7oii:c (3.0) BS01 rna ? GO:0002181 ... P0A7P5 34994471
    40 7oii:d (3.0) BS01 rna N/A GO:0003735 ... N/A 34994471
    41 7oii:e (3.0) BS01 rna ? GO:0002181 ... P0A7Q6 34994471
    42 7oii:e (3.0) BS02 ZN ? GO:0002181 ... P0A7Q6 34994471
    43 7oii:f (3.0) BS01 rna N/A GO:0003735 ... N/A 34994471
    44 7oii:g (3.0) BS01 rna N/A GO:0003676 ... N/A 34994471
    45 7oii:h (3.0) BS01 rna N/A GO:0003723 ... N/A 34994471
    46 7oii:h (3.0) BS02 MG N/A GO:0003723 ... N/A 34994471
    47 7oii:i (3.0) BS01 rna N/A GO:0003723 ... N/A 34994471
    48 7oii:j (3.0) BS01 rna N/A GO:0003735 ... N/A 34994471
    49 7oii:k (3.0) BS01 rna ? GO:0003723 ... P02359 34994471
    50 7oii:l (3.0) BS01 rna N/A GO:0003735 ... N/A 34994471
    51 7oii:m (3.0) BS01 rna N/A GO:0003735 ... N/A 34994471
    52 7oii:m (3.0) BS02 rna N/A GO:0003735 ... N/A 34994471
    53 7oii:n (3.0) BS01 rna N/A GO:0003723 ... N/A 34994471
    54 7oii:o (3.0) BS01 rna ? GO:0003735 ... A0A5I5F5V9 34994471
    55 7oii:p (3.0) BS01 rna N/A GO:0003735 ... N/A 34994471
    56 7oii:q (3.0) BS01 rna N/A GO:0003676 ... N/A 34994471
    57 7oii:q (3.0) BS02 rna N/A GO:0003676 ... N/A 34994471
    58 7oii:q (3.0) BS03 MG N/A GO:0003676 ... N/A 34994471
    59 7oii:r (3.0) BS01 rna N/A GO:0003735 ... N/A 34994471
    60 7oii:s (3.0) BS01 rna N/A GO:0003735 ... N/A 34994471
    61 7oii:s (3.0) BS02 rna N/A GO:0003735 ... N/A 34994471
    62 7oii:t (3.0) BS01 rna ? GO:0000028 ... C3SYP2 34994471
    63 7oii:u (3.0) BS01 rna N/A GO:0003735 ... N/A 34994471
    64 7oii:v (3.0) BS01 rna N/A GO:0003735 ... N/A 34994471
    65 7oii:w (3.0) BS01 rna N/A GO:0003723 ... N/A 34994471
    66 7oii:x (3.0) BS01 rna N/A GO:0003723 ... N/A 34994471
    67 7oii:y (3.0) BS01 rna N/A GO:0003735 ... N/A 34994471
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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