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BioLiP
Download all results in tab-seperated text for 53 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7of1:A (3.1) BS01 rna ? GO:0002181 ... P0CX45 34813592
    2 7of1:B (3.1) BS01 rna ? GO:0000027 ... P14126 34813592
    3 7of1:C (3.1) BS01 rna ? GO:0002181 ... P10664 34813592
    4 7of1:C (3.1) BS02 rna ? GO:0002181 ... P10664 34813592
    5 7of1:E (3.1) BS01 rna ? GO:0000027 ... Q02326 34813592
    6 7of1:F (3.1) BS01 rna ? GO:0000463 ... P05737 34813592
    7 7of1:F (3.1) BS02 rna ? GO:0000463 ... P05737 34813592
    8 7of1:G (3.1) BS01 rna ? GO:0000470 ... P17076 34813592
    9 7of1:G (3.1) BS02 rna ? GO:0000470 ... P17076 34813592
    10 7of1:H (3.1) BS01 rna ? GO:0002181 ... P05738 34813592
    11 7of1:L (3.1) BS01 rna ? GO:0002181 ... Q12690 34813592
    12 7of1:L (3.1) BS02 rna ? GO:0002181 ... Q12690 34813592
    13 7of1:M (3.1) BS01 rna ? GO:0000027 ... P36105 34813592
    14 7of1:N (3.1) BS01 rna ? GO:0002181 ... P05748 34813592
    15 7of1:N (3.1) BS02 rna ? GO:0002181 ... P05748 34813592
    16 7of1:O (3.1) BS01 rna ? GO:0000470 ... P26784 34813592
    17 7of1:P (3.1) BS01 rna ? GO:0000448 ... P05740 34813592
    18 7of1:P (3.1) BS02 rna ? GO:0000448 ... P05740 34813592
    19 7of1:Q (3.1) BS01 rna ? GO:0002181 ... P0CX49 34813592
    20 7of1:R (3.1) BS01 rna ? GO:0002181 ... P0CX82 34813592
    21 7of1:S (3.1) BS01 rna ? GO:0002181 ... P0CX23 34813592
    22 7of1:S (3.1) BS02 rna ? GO:0002181 ... P0CX23 34813592
    23 7of1:T (3.1) BS01 rna ? GO:0002181 ... Q02753 34813592
    24 7of1:U (3.1) BS01 rna ? GO:0002181 ... P05749 34813592
    25 7of1:V (3.1) BS01 rna ? GO:0002181 ... P0CX41 34813592
    26 7of1:W (3.1) BS01 rna ? GO:0000027 ... P33201 34813592
    27 7of1:X (3.1) BS01 rna ? GO:0000027 ... P04456 34813592
    28 7of1:X (3.1) BS02 rna ? GO:0000027 ... P04456 34813592
    29 7of1:Y (3.1) BS01 rna ? GO:0002181 ... P05743 34813592
    30 7of1:Y (3.1) BS02 rna ? GO:0002181 ... P05743 34813592
    31 7of1:Z (3.1) BS01 rna ? GO:0002181 ... P0C2H6 34813592
    32 7of1:a (3.1) BS01 rna ? GO:0002181 ... P02406 34813592
    33 7of1:b (3.1) BS01 rna ? GO:0000054 ... Q02892 34813592
    34 7of1:b (3.1) BS02 MG ? GO:0000054 ... Q02892 34813592
    35 7of1:c (3.1) BS01 rna ? GO:0002181 ... P14120 34813592
    36 7of1:d (3.1) BS01 rna ? GO:0002181 ... P0C2H8 34813592
    37 7of1:e (3.1) BS01 rna ? GO:0002181 ... P38061 34813592
    38 7of1:f (3.1) BS01 rna ? GO:0000027 ... P05744 34813592
    39 7of1:g (3.1) BS01 rna ? GO:0002181 ... P87262 34813592
    40 7of1:h (3.1) BS01 rna ? GO:0000463 ... P0CX84 34813592
    41 7of1:h (3.1) BS02 rna ? GO:0000463 ... P0CX84 34813592
    42 7of1:i (3.1) BS01 rna ? GO:0002181 ... P05745 34813592
    43 7of1:j (3.1) BS01 rna ? GO:0000448 ... P49166 34813592
    44 7of1:j (3.1) BS02 rna ? GO:0000448 ... P49166 34813592
    45 7of1:k (3.1) BS01 rna ? GO:0002181 ... P49167 34813592
    46 7of1:l (3.1) BS01 rna ? GO:0002181 ... P04650 34813592
    47 7of1:l (3.1) BS02 rna ? GO:0002181 ... P04650 34813592
    48 7of1:m (3.1) BS01 rna ? GO:0000055 ... P53742 34813592
    49 7of1:m (3.1) BS02 MG ? GO:0000055 ... P53742 34813592
    50 7of1:p (3.1) BS01 rna ? GO:0002181 ... P0CX25 34813592
    51 7of1:r (3.1) BS01 rna ? GO:0000460 ... P40078 34813592
    52 7of1:u (3.1) BS01 rna ? GO:0001671 ... Q07915 34813592
    53 7of1:y (3.1) BS01 rna ? GO:0000054 ... Q12522 34813592
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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