Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 65 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7o1a:AB (2.4) BS01 rna ? GO:0000028 ... P0A7V0 34504068
    2 7o1a:AB (2.4) BS02 ZN ? GO:0000028 ... P0A7V0 34504068
    3 7o1a:AC (2.4) BS01 rna ? GO:0000028 ... P0A7V3 34504068
    4 7o1a:AD (2.4) BS01 rna ? GO:0000028 ... P0A7V8 34504068
    5 7o1a:AE (2.4) BS01 rna ? GO:0000028 ... P0A7W1 34504068
    6 7o1a:AF (2.4) BS01 rna ? GO:0002181 ... P02358 34504068
    7 7o1a:AG (2.4) BS01 rna ? GO:0000028 ... P02359 34504068
    8 7o1a:AH (2.4) BS01 rna ? GO:0000028 ... P0A7W7 34504068
    9 7o1a:AI (2.4) BS01 rna ? GO:0000049 ... P0A7X3 34504068
    10 7o1a:AI (2.4) BS02 rna ? GO:0000049 ... P0A7X3 34504068
    11 7o1a:AJ (2.4) BS01 rna ? GO:0000049 ... P0A7R5 34504068
    12 7o1a:AK (2.4) BS01 rna ? GO:0002181 ... P0A7R9 34504068
    13 7o1a:AL (2.4) BS01 rna ? GO:0000049 ... P0A7S3 34504068
    14 7o1a:AM (2.4) BS01 rna ? GO:0000049 ... P0A7S9 34504068
    15 7o1a:AN (2.4) BS01 rna ? GO:0003735 ... P0AG59 34504068
    16 7o1a:AO (2.4) BS01 rna ? GO:0000028 ... P0ADZ4 34504068
    17 7o1a:AO (2.4) BS02 rna ? GO:0000028 ... P0ADZ4 34504068
    18 7o1a:AP (2.4) BS01 rna ? GO:0000028 ... P0A7T3 34504068
    19 7o1a:AQ (2.4) BS01 rna ? GO:0000028 ... P0AG63 34504068
    20 7o1a:AR (2.4) BS01 rna ? GO:0002181 ... P0A7T7 34504068
    21 7o1a:AS (2.4) BS01 rna ? GO:0000028 ... P0A7U3 34504068
    22 7o1a:AT (2.4) BS01 rna ? GO:0000028 ... P0A7U7 34504068
    23 7o1a:AU (2.4) BS01 rna ? GO:0000028 ... P68679 34504068
    24 7o1a:B0 (2.4) BS01 rna ? GO:0000027 ... P0A7N4 34504068
    25 7o1a:B1 (2.4) BS01 rna ? GO:0000027 ... P0A7N9 34504068
    26 7o1a:B2 (2.4) BS01 rna ? GO:0002181 ... P0A7P5 34504068
    27 7o1a:B3 (2.4) BS01 rna ? GO:0002181 ... P0A7Q1 34504068
    28 7o1a:B4 (2.4) BS01 rna ? GO:0002181 ... P0A7Q6 34504068
    29 7o1a:B4 (2.4) BS02 ZN ? GO:0002181 ... P0A7Q6 34504068
    30 7o1a:BC (2.4) BS01 rna ? GO:0000027 ... P60422 34504068
    31 7o1a:BC (2.4) BS02 rna ? GO:0000027 ... P60422 34504068
    32 7o1a:BD (2.4) BS01 rna ? GO:0000027 ... P60438 34504068
    33 7o1a:BD (2.4) BS02 MG ? GO:0000027 ... P60438 34504068
    34 7o1a:BE (2.4) BS01 rna ? GO:0001070 ... P60723 34504068
    35 7o1a:BF (2.4) BS01 rna ? GO:0000027 ... P62399 34504068
    36 7o1a:BF (2.4) BS02 rna ? GO:0000027 ... P62399 34504068
    37 7o1a:BF (2.4) BS03 rna ? GO:0000027 ... P62399 34504068
    38 7o1a:BG (2.4) BS01 rna ? GO:0000027 ... P0AG55 34504068
    39 7o1a:BH (2.4) BS01 rna ? GO:0002181 ... P0A7R1 34504068
    40 7o1a:BI (2.4) BS01 rna ? GO:0002181 ... P0A7M9 34504068
    41 7o1a:BI (2.4) BS02 ZN ? GO:0002181 ... P0A7M9 34504068
    42 7o1a:BJ (2.4) BS01 rna ? GO:0002181 ... P0AA10 34504068
    43 7o1a:BK (2.4) BS01 rna ? GO:0002181 ... P0ADY3 34504068
    44 7o1a:BK (2.4) BS02 rna ? GO:0002181 ... P0ADY3 34504068
    45 7o1a:BL (2.4) BS01 rna ? GO:0002181 ... P02413 34504068
    46 7o1a:BL (2.4) BS02 MG ? GO:0002181 ... P02413 34504068
    47 7o1a:BM (2.4) BS01 rna ? GO:0000027 ... P0ADY7 34504068
    48 7o1a:BM (2.4) BS02 rna ? GO:0000027 ... P0ADY7 34504068
    49 7o1a:BN (2.4) BS01 rna ? GO:0000027 ... P0AG44 34504068
    50 7o1a:BO (2.4) BS01 rna ? GO:0002181 ... P0C018 34504068
    51 7o1a:BO (2.4) BS02 rna ? GO:0002181 ... P0C018 34504068
    52 7o1a:BP (2.4) BS01 rna ? GO:0000027 ... P0A7K6 34504068
    53 7o1a:BP (2.4) BS02 rna ? GO:0000027 ... P0A7K6 34504068
    54 7o1a:BQ (2.4) BS01 rna ? GO:0000027 ... P0A7L3 34504068
    55 7o1a:BR (2.4) BS01 rna ? GO:0002181 ... P0AG48 34504068
    56 7o1a:BS (2.4) BS01 rna ? GO:0002181 ... P61175 34504068
    57 7o1a:BT (2.4) BS01 rna ? GO:0000027 ... P0ADZ0 34504068
    58 7o1a:BU (2.4) BS01 rna ? GO:0000027 ... P60624 34504068
    59 7o1a:BV (2.4) BS01 rna ? GO:0000027 ... P68919 34504068
    60 7o1a:BW (2.4) BS01 rna ? GO:0000027 ... P0A7L8 34504068
    61 7o1a:BW (2.4) BS02 rna ? GO:0000027 ... P0A7L8 34504068
    62 7o1a:BX (2.4) BS01 rna ? GO:0000027 ... P0A7M2 34504068
    63 7o1a:BY (2.4) BS01 rna ? GO:0000027 ... P0A7M6 34504068
    64 7o1a:BZ (2.4) BS01 rna ? GO:0000027 ... P0AG51 34504068
    65 7o1a:BZ (2.4) BS02 rna ? GO:0000027 ... P0AG51 34504068
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218