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BioLiP
Download all results in tab-seperated text for 111 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7nwg:A3 (3.8) BS01 rna N/A GO:0003735 ... N/A 34157102
    2 7nwg:A3 (3.8) BS02 rna N/A GO:0003735 ... N/A 34157102
    3 7nwg:B2 (3.8) BS01 rna ? GO:0000028 ... G1TLT8 34157102
    4 7nwg:B3 (3.8) BS01 rna ? GO:0003723 ... G1TL06 34157102
    5 7nwg:B3 (3.8) BS02 MG ? GO:0003723 ... G1TL06 34157102
    6 7nwg:B3 (3.8) BS03 MG ? GO:0003723 ... G1TL06 34157102
    7 7nwg:C2 (3.8) BS01 rna ? GO:0003735 ... G1SS70 34157102
    8 7nwg:C3 (3.8) BS01 rna ? GO:0003723 ... G1SVW5 34157102
    9 7nwg:D2 (3.8) BS01 rna N/A GO:0003723 ... N/A 34157102
    10 7nwg:D2 (3.8) BS02 rna N/A GO:0003723 ... N/A 34157102
    11 7nwg:D3 (3.8) BS01 rna ? GO:0000027 ... P19949 34157102
    12 7nwg:D3 (3.8) BS02 rna ? GO:0000027 ... P19949 34157102
    13 7nwg:E2 (3.8) BS01 rna 4.2.99.18 GO:0003677 ... G1TNM3 34157102
    14 7nwg:E3 (3.8) BS01 rna ? GO:0000027 ... G1SKF7 34157102
    15 7nwg:F2 (3.8) BS01 rna N/A GO:0003723 ... N/A 34157102
    16 7nwg:F2 (3.8) BS02 MG N/A GO:0003723 ... N/A 34157102
    17 7nwg:F3 (3.8) BS01 rna ? GO:0000463 ... G1SV32 34157102
    18 7nwg:F3 (3.8) BS02 rna ? GO:0000463 ... G1SV32 34157102
    19 7nwg:G2 (3.8) BS01 rna ? GO:0000028 ... G1TFM5 34157102
    20 7nwg:G3 (3.8) BS01 rna ? GO:0042254 ... G1STW0 34157102
    21 7nwg:G3 (3.8) BS02 rna ? GO:0042254 ... G1STW0 34157102
    22 7nwg:H2 (3.8) BS01 rna ? GO:0003735 ... A0A5K1UJS7 34157102
    23 7nwg:H3 (3.8) BS01 rna ? GO:0002181 ... G1SWI6 34157102
    24 7nwg:I2 (3.8) BS01 rna ? GO:0003735 ... G1SVB0 34157102
    25 7nwg:I3 (3.8) BS01 rna ? GO:0000027 ... B7NZQ2 34157102
    26 7nwg:I3 (3.8) BS02 rna ? GO:0000027 ... B7NZQ2 34157102
    27 7nwg:I3 (3.8) BS03 rna ? GO:0000027 ... B7NZQ2 34157102
    28 7nwg:J2 (3.8) BS01 rna ? GO:0000462 ... G1TJW1 34157102
    29 7nwg:J2 (3.8) BS02 rna ? GO:0000462 ... G1TJW1 34157102
    30 7nwg:J3 (3.8) BS01 rna ? GO:0003723 ... G1TUB8 34157102
    31 7nwg:J3 (3.8) BS02 rna ? GO:0003723 ... G1TUB8 34157102
    32 7nwg:K2 (3.8) BS01 rna ? GO:0003723 ... A0A1S3APZ1 34157102
    33 7nwg:K2 (3.8) BS02 MG ? GO:0003723 ... A0A1S3APZ1 34157102
    34 7nwg:L2 (3.8) BS01 rna ? N/A A0A2F0BDG8 34157102
    35 7nwg:L3 (3.8) BS01 rna ? GO:0003723 ... G1TKB3 34157102
    36 7nwg:L3 (3.8) BS02 rna ? GO:0003723 ... G1TKB3 34157102
    37 7nwg:M2 (3.8) BS01 rna ? GO:0003735 ... G1TRM4 34157102
    38 7nwg:M2 (3.8) BS02 MG ? GO:0003735 ... G1TRM4 34157102
    39 7nwg:M3 (3.8) BS01 rna ? GO:0003723 ... G1SZ12 34157102
    40 7nwg:N2 (3.8) BS01 rna ? GO:0003735 ... G1SFR8 34157102
    41 7nwg:N3 (3.8) BS01 rna ? GO:0002181 ... G1T0C1 34157102
    42 7nwg:O2 (3.8) BS01 rna ? GO:0003735 ... G1SP51 34157102
    43 7nwg:O3 (3.8) BS01 rna N/A GO:0003735 ... N/A 34157102
    44 7nwg:P2 (3.8) BS01 rna ? GO:0000028 ... G1T1F0 34157102
    45 7nwg:P3 (3.8) BS01 rna N/A GO:0003735 ... N/A 34157102
    46 7nwg:P3 (3.8) BS02 rna N/A GO:0003735 ... N/A 34157102
    47 7nwg:P3 (3.8) BS03 peptide N/A GO:0003735 ... N/A 34157102
    48 7nwg:Q2 (3.8) BS01 rna ? GO:0000028 ... G1U0Q2 34157102
    49 7nwg:Q3 (3.8) BS01 rna N/A GO:0003735 ... N/A 34157102
    50 7nwg:R2 (3.8) BS01 rna ? GO:0000462 ... G1SGX4 34157102
    51 7nwg:R3 (3.8) BS01 rna ? GO:0003723 ... Q3T0W9 34157102
    52 7nwg:R3 (3.8) BS02 rna ? GO:0003723 ... Q3T0W9 34157102
    53 7nwg:R3 (3.8) BS03 MG ? GO:0003723 ... Q3T0W9 34157102
    54 7nwg:S2 (3.8) BS01 rna ? GO:0003735 ... S7Q348 34157102
    55 7nwg:S3 (3.8) BS01 rna ? GO:0003735 ... A0A287APR1 34157102
    56 7nwg:S3 (3.8) BS02 rna ? GO:0003735 ... A0A287APR1 34157102
    57 7nwg:T2 (3.8) BS01 rna ? GO:0003676 ... G1TPG3 34157102
    58 7nwg:T3 (3.8) BS01 rna ? GO:0003735 ... G1SHQ2 34157102
    59 7nwg:T3 (3.8) BS02 rna ? GO:0003735 ... G1SHQ2 34157102
    60 7nwg:U2 (3.8) BS01 rna ? GO:0000028 ... G1TN62 34157102
    61 7nwg:U3 (3.8) BS01 rna N/A GO:0003735 ... N/A 34157102
    62 7nwg:V2 (3.8) BS01 rna N/A GO:0003723 ... N/A 34157102
    63 7nwg:V3 (3.8) BS01 rna ? GO:0000122 ... G1T6D1 34157102
    64 7nwg:V3 (3.8) BS02 rna ? GO:0000122 ... G1T6D1 34157102
    65 7nwg:W (3.8) BS01 rna ? GO:0002181 ... A0A061I3X8 34157102
    66 7nwg:X2 (3.8) BS01 rna N/A GO:0003735 ... N/A 34157102
    67 7nwg:X3 (3.8) BS01 rna ? GO:0000027 ... G1SE76 34157102
    68 7nwg:X3 (3.8) BS02 rna ? GO:0000027 ... G1SE76 34157102
    69 7nwg:Y2 (3.8) BS01 rna ? GO:0003735 ... G1SZ47 34157102
    70 7nwg:Y3 (3.8) BS01 rna ? GO:0002181 ... G1SQH0 34157102
    71 7nwg:Y3 (3.8) BS02 rna ? GO:0002181 ... G1SQH0 34157102
    72 7nwg:Z2 (3.8) BS01 rna N/A GO:0003735 ... N/A 34157102
    73 7nwg:Z3 (3.8) BS01 rna ? GO:0003735 ... G1TXF6 34157102
    74 7nwg:a2 (3.8) BS01 rna N/A N/A N/A 34157102
    75 7nwg:a3 (3.8) BS01 rna N/A GO:0003735 ... N/A 34157102
    76 7nwg:b2 (3.8) BS01 rna ? GO:0003729 ... T0M5X4 34157102
    77 7nwg:b2 (3.8) BS02 ZN ? GO:0003729 ... T0M5X4 34157102
    78 7nwg:b3 (3.8) BS01 rna ? GO:0002181 ... G1SGR6 34157102
    79 7nwg:c2 (3.8) BS01 rna ? GO:0000028 ... G1TZ76 34157102
    80 7nwg:c3 (3.8) BS01 rna ? GO:0002181 ... G1TDL2 34157102
    81 7nwg:d2 (3.8) BS01 rna ? GO:0000028 ... G1TIB4 34157102
    82 7nwg:d3 (3.8) BS01 rna ? GO:0003735 ... G1SHG0 34157102
    83 7nwg:e2 (3.8) BS01 rna ? GO:0003735 ... G1U7M4 34157102
    84 7nwg:e3 (3.8) BS01 rna ? GO:0003735 ... G1TUN8 34157102
    85 7nwg:f2 (3.8) BS01 rna ? GO:0003735 ... G1T8A2 34157102
    86 7nwg:f3 (3.8) BS01 rna ? GO:0000049 ... G1SF08 34157102
    87 7nwg:g2 (3.8) BS01 rna ? GO:0003735 ... G1SK22 34157102
    88 7nwg:g3 (3.8) BS01 rna ? GO:0003735 ... G1TXG5 34157102
    89 7nwg:g3 (3.8) BS02 MG ? GO:0003735 ... G1TXG5 34157102
    90 7nwg:g3 (3.8) BS03 ZN ? GO:0003735 ... G1TXG5 34157102
    91 7nwg:h2 (3.8) BS01 rna ? GO:0001891 ... G1SJB4 34157102
    92 7nwg:h3 (3.8) BS01 rna ? GO:0000463 ... G1SIT5 34157102
    93 7nwg:h3 (3.8) BS02 rna ? GO:0000463 ... G1SIT5 34157102
    94 7nwg:i3 (3.8) BS01 rna N/A GO:0003735 ... N/A 34157102
    95 7nwg:j3 (3.8) BS01 rna ? GO:0003723 ... U3KPD5 34157102
    96 7nwg:j3 (3.8) BS02 rna ? GO:0003723 ... U3KPD5 34157102
    97 7nwg:j3 (3.8) BS03 ZN ? GO:0003723 ... U3KPD5 34157102
    98 7nwg:k3 (3.8) BS01 rna N/A GO:0003735 ... N/A 34157102
    99 7nwg:l3 (3.8) BS01 rna ? GO:0003735 ... G1TTN1 34157102
    100 7nwg:l3 (3.8) BS02 rna ? GO:0003735 ... G1TTN1 34157102
    101 7nwg:m3 (3.8) BS01 rna N/A GO:0003735 ... N/A 34157102
    102 7nwg:m3 (3.8) BS02 ZN N/A GO:0003735 ... N/A 34157102
    103 7nwg:o3 (3.8) BS01 rna N/A GO:0003735 ... N/A 34157102
    104 7nwg:o3 (3.8) BS02 rna N/A GO:0003735 ... N/A 34157102
    105 7nwg:o3 (3.8) BS03 ZN N/A GO:0003735 ... N/A 34157102
    106 7nwg:p3 (3.8) BS01 rna N/A GO:0003735 ... N/A 34157102
    107 7nwg:p3 (3.8) BS02 ZN N/A GO:0003735 ... N/A 34157102
    108 7nwg:r3 (3.8) BS01 rna ? GO:0003735 ... G1U7L1 34157102
    109 7nwg:t3 (3.8) BS01 rna ? GO:0000027 ... G1SPK4 34157102
    110 7nwg:u3 (3.8) BS01 rna N/A GO:0003735 ... N/A 34157102
    111 7nwg:w3 (3.8) BS01 rna ? GO:0000470 ... G1SKZ8 34157102
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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