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BioLiP
Download all results in tab-seperated text for 32 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7nkx:A (2.9) BS01 dna 2.7.7.6 GO:0000428 ... P04050 33846633
    2 7nkx:A (2.9) BS02 dna 2.7.7.6 GO:0000428 ... P04050 33846633
    3 7nkx:A (2.9) BS03 rna 2.7.7.6 GO:0000428 ... P04050 33846633
    4 7nkx:A (2.9) BS04 ZN 2.7.7.6 GO:0000428 ... P04050 33846633
    5 7nkx:A (2.9) BS05 ZN 2.7.7.6 GO:0000428 ... P04050 33846633
    6 7nkx:A (2.9) BS06 MG 2.7.7.6 GO:0000428 ... P04050 33846633
    7 7nkx:B (2.9) BS01 dna 2.7.7.6 GO:0000428 ... P08518 33846633
    8 7nkx:B (2.9) BS02 dna 2.7.7.6 GO:0000428 ... P08518 33846633
    9 7nkx:B (2.9) BS03 rna 2.7.7.6 GO:0000428 ... P08518 33846633
    10 7nkx:B (2.9) BS04 ZN 2.7.7.6 GO:0000428 ... P08518 33846633
    11 7nkx:C (2.9) BS01 ZN ? GO:0000428 ... P16370 33846633
    12 7nkx:I (2.9) BS01 ZN ? GO:0000428 ... P27999 33846633
    13 7nkx:I (2.9) BS02 ZN ? GO:0000428 ... P27999 33846633
    14 7nkx:J (2.9) BS01 ZN ? GO:0000428 ... P22139 33846633
    15 7nkx:L (2.9) BS01 ZN ? GO:0000428 ... P40422 33846633
    16 7nkx:W (2.9) BS01 dna 3.6.4.- GO:0000123 ... P32657 33846633
    17 7nkx:W (2.9) BS02 dna 3.6.4.- GO:0000123 ... P32657 33846633
    18 7nkx:W (2.9) BS03 ADP 3.6.4.- GO:0000123 ... P32657 33846633
    19 7nkx:W (2.9) BS04 BEF 3.6.4.- GO:0000123 ... P32657 33846633
    20 7nkx:Z (2.9) BS01 dna ? GO:0000245 ... P27692 33846633
    21 7nkx:a (2.9) BS01 dna ? GO:0000786 ... P84233 33846633
    22 7nkx:a (2.9) BS02 dna ? GO:0000786 ... P84233 33846633
    23 7nkx:b (2.9) BS01 dna ? GO:0000786 ... P62799 33846633
    24 7nkx:b (2.9) BS02 dna ? GO:0000786 ... P62799 33846633
    25 7nkx:c (2.9) BS01 dna ? GO:0000786 ... P06897 33846633
    26 7nkx:c (2.9) BS02 dna ? GO:0000786 ... P06897 33846633
    27 7nkx:d (2.9) BS01 dna ? GO:0000786 ... P02281 33846633
    28 7nkx:d (2.9) BS02 dna ? GO:0000786 ... P02281 33846633
    29 7nkx:e (2.9) BS01 dna ? GO:0000786 ... P84233 33846633
    30 7nkx:e (2.9) BS02 dna ? GO:0000786 ... P84233 33846633
    31 7nkx:f (2.9) BS01 dna ? GO:0000786 ... P62799 33846633
    32 7nkx:f (2.9) BS02 dna ? GO:0000786 ... P62799 33846633
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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