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BioLiP
Download all results in tab-seperated text for 31 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7mfo:A (1.7) BS01 PMP ? GO:0000271 ... Q5UPL1 34076307
    2 7mfo:A (1.7) BS02 PO4 ? GO:0000271 ... Q5UPL1 34076307
    3 7mfo:A (1.7) BS03 TYD ? GO:0000271 ... Q5UPL1 34076307
    4 7mfo:A (1.7) BS04 TYD ? GO:0000271 ... Q5UPL1 34076307
    5 7mfo:B (1.7) BS01 TYD ? GO:0000271 ... Q5UPL1 34076307
    6 7mfo:B (1.7) BS02 PMP ? GO:0000271 ... Q5UPL1 34076307
    7 7mfo:B (1.7) BS03 TYD ? GO:0000271 ... Q5UPL1 34076307
    8 7mfo:C (1.7) BS01 PMP ? GO:0000271 ... Q5UPL1 34076307
    9 7mfo:C (1.7) BS02 TYD ? GO:0000271 ... Q5UPL1 34076307
    10 7mfo:C (1.7) BS03 TYD ? GO:0000271 ... Q5UPL1 34076307
    11 7mfo:D (1.7) BS01 TYD ? GO:0000271 ... Q5UPL1 34076307
    12 7mfo:D (1.7) BS02 TYD ? GO:0000271 ... Q5UPL1 34076307
    13 7mfo:D (1.7) BS03 PMP ? GO:0000271 ... Q5UPL1 34076307
    14 7mfo:E (1.7) BS01 PMP ? GO:0000271 ... Q5UPL1 34076307
    15 7mfo:E (1.7) BS02 TYD ? GO:0000271 ... Q5UPL1 34076307
    16 7mfo:E (1.7) BS03 TYD ? GO:0000271 ... Q5UPL1 34076307
    17 7mfo:F (1.7) BS01 TYD ? GO:0000271 ... Q5UPL1 34076307
    18 7mfo:F (1.7) BS02 TYD ? GO:0000271 ... Q5UPL1 34076307
    19 7mfo:F (1.7) BS03 PMP ? GO:0000271 ... Q5UPL1 34076307
    20 7mfo:G (1.7) BS01 PMP ? GO:0000271 ... Q5UPL1 34076307
    21 7mfo:G (1.7) BS02 TYD ? GO:0000271 ... Q5UPL1 34076307
    22 7mfo:G (1.7) BS03 TYD ? GO:0000271 ... Q5UPL1 34076307
    23 7mfo:H (1.7) BS01 TYD ? GO:0000271 ... Q5UPL1 34076307
    24 7mfo:H (1.7) BS02 TYD ? GO:0000271 ... Q5UPL1 34076307
    25 7mfo:H (1.7) BS03 PMP ? GO:0000271 ... Q5UPL1 34076307
    26 7mfo:I (1.7) BS01 PMP ? GO:0000271 ... Q5UPL1 34076307
    27 7mfo:I (1.7) BS02 TYD ? GO:0000271 ... Q5UPL1 34076307
    28 7mfo:I (1.7) BS03 TYD ? GO:0000271 ... Q5UPL1 34076307
    29 7mfo:J (1.7) BS01 TYD ? GO:0000271 ... Q5UPL1 34076307
    30 7mfo:J (1.7) BS02 TYD ? GO:0000271 ... Q5UPL1 34076307
    31 7mfo:J (1.7) BS03 PMP ? GO:0000271 ... Q5UPL1 34076307

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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