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BioLiP
Download all results in tab-seperated text for 33 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7m4v:0 (2.54) BS01 rna ? GO:0003735 ... A0A7U4DFF9 34044590
    2 7m4v:1 (2.54) BS01 rna ? GO:0003735 ... B7IBH8 34044590
    3 7m4v:2 (2.54) BS01 rna ? GO:0003735 ... B7I693 34044590
    4 7m4v:3 (2.54) BS01 rna ? GO:0003735 ... B7IA18 34044590
    5 7m4v:3 (2.54) BS02 ZN ? GO:0003735 ... B7IA18 34044590
    6 7m4v:C (2.54) BS01 rna ? GO:0002181 ... B7IA36 34044590
    7 7m4v:D (2.54) BS01 rna ? GO:0003735 ... B7IA39 34044590
    8 7m4v:E (2.54) BS01 rna ? GO:0003735 ... B7IA38 34044590
    9 7m4v:F (2.54) BS01 rna ? GO:0000049 ... B7IA27 34044590
    10 7m4v:F (2.54) BS02 rna ? GO:0000049 ... B7IA27 34044590
    11 7m4v:G (2.54) BS01 rna ? GO:0002181 ... B7IA24 34044590
    12 7m4v:H (2.54) BS01 rna ? GO:0003735 ... B7IBC3 34044590
    13 7m4v:I (2.54) BS01 rna ? GO:0003729 ... B7I9B0 34044590
    14 7m4v:J (2.54) BS01 rna ? GO:0003735 ... B7IA29 34044590
    15 7m4v:K (2.54) BS01 rna ? GO:0003735 ... B7IA20 34044590
    16 7m4v:K (2.54) BS02 MG ? GO:0003735 ... B7IA20 34044590
    17 7m4v:L (2.54) BS01 rna ? GO:0000049 ... B7IA32 34044590
    18 7m4v:M (2.54) BS01 rna ? GO:0003735 ... B7IA13 34044590
    19 7m4v:N (2.54) BS01 rna ? GO:0003735 ... B7IA23 34044590
    20 7m4v:N (2.54) BS02 rna ? GO:0003735 ... B7IA23 34044590
    21 7m4v:O (2.54) BS01 rna ? GO:0003735 ... B7IAS9 34044590
    22 7m4v:P (2.54) BS01 rna ? GO:0000027 ... B7I694 34044590
    23 7m4v:Q (2.54) BS01 rna ? GO:0003723 ... B7I6V9 34044590
    24 7m4v:R (2.54) BS01 rna ? GO:0003735 ... A0A7U3Y9I4 34044590
    25 7m4v:S (2.54) BS01 rna ? GO:0000027 ... B7IA37 34044590
    26 7m4v:T (2.54) BS01 rna ? GO:0003723 ... B7IA28 34044590
    27 7m4v:U (2.54) BS01 rna ? GO:0003723 ... B7I7B6 34044590
    28 7m4v:V (2.54) BS01 rna ? GO:0003735 ... B7I6V8 34044590
    29 7m4v:V (2.54) BS02 rna ? GO:0003735 ... B7I6V8 34044590
    30 7m4v:W (2.54) BS01 rna ? GO:0003735 ... B7I4T0 34044590
    31 7m4v:X (2.54) BS01 rna ? GO:0003735 ... B7IA31 34044590
    32 7m4v:Y (2.54) BS01 rna ? GO:0003735 ... B7IA21 34044590
    33 7m4v:Z (2.54) BS01 rna ? GO:0003735 ... B7I7A4 34044590
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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