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BioLiP
Download all results in tab-seperated text for 63 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7lv0:A (3.2) BS01 rna ? GO:0002181 ... P0A7M9 34330903
    2 7lv0:B (3.2) BS01 rna ? GO:0000027 ... P0A7N4 34330903
    3 7lv0:C (3.2) BS01 rna ? GO:0000027 ... P0A7N9 34330903
    4 7lv0:D (3.2) BS01 rna ? GO:0002181 ... P0A7P5 34330903
    5 7lv0:E (3.2) BS01 rna ? GO:0002181 ... P0A7Q1 34330903
    6 7lv0:F (3.2) BS01 rna ? GO:0002181 ... P0A7Q6 34330903
    7 7lv0:G (3.2) BS01 rna ? GO:0000028 ... P0A7V0 34330903
    8 7lv0:H (3.2) BS01 rna ? GO:0003676 ... P0A7V3 34330903
    9 7lv0:I (3.2) BS01 rna ? GO:0000028 ... P0A7V8 34330903
    10 7lv0:J (3.2) BS01 rna ? GO:0000028 ... P0A7W1 34330903
    11 7lv0:K (3.2) BS01 rna ? GO:0003735 ... P02358 34330903
    12 7lv0:L (3.2) BS01 rna ? GO:0003723 ... P02359 34330903
    13 7lv0:M (3.2) BS01 rna ? GO:0000028 ... P0A7W7 34330903
    14 7lv0:N (3.2) BS01 rna ? GO:0000049 ... P0A7X3 34330903
    15 7lv0:N (3.2) BS02 rna ? GO:0000049 ... P0A7X3 34330903
    16 7lv0:O (3.2) BS01 rna ? GO:0000049 ... P0A7R5 34330903
    17 7lv0:P (3.2) BS01 rna ? GO:0002181 ... P0A7R9 34330903
    18 7lv0:Q (3.2) BS01 rna ? GO:0000049 ... P0A7S3 34330903
    19 7lv0:R (3.2) BS01 rna ? GO:0000049 ... P0A7S9 34330903
    20 7lv0:S (3.2) BS01 rna ? GO:0000028 ... P0AG59 34330903
    21 7lv0:T (3.2) BS01 rna ? GO:0000028 ... P0ADZ4 34330903
    22 7lv0:T (3.2) BS02 rna ? GO:0000028 ... P0ADZ4 34330903
    23 7lv0:U (3.2) BS01 rna ? GO:0000028 ... P0A7T3 34330903
    24 7lv0:V (3.2) BS01 rna ? GO:0000028 ... P0AG63 34330903
    25 7lv0:W (3.2) BS01 rna ? GO:0003735 ... P0A7T7 34330903
    26 7lv0:X (3.2) BS01 rna ? GO:0003723 ... P0A7U3 34330903
    27 7lv0:Y (3.2) BS01 rna ? GO:0000028 ... P0A7U7 34330903
    28 7lv0:Z (3.2) BS01 rna ? GO:0000028 ... P68679 34330903
    29 7lv0:Z (3.2) BS02 rna ? GO:0000028 ... P68679 34330903
    30 7lv0:a (3.2) BS01 rna ? GO:0000027 ... P0A7L0 34330903
    31 7lv0:b (3.2) BS01 rna ? GO:0000027 ... P60422 34330903
    32 7lv0:b (3.2) BS02 rna ? GO:0000027 ... P60422 34330903
    33 7lv0:c (3.2) BS01 rna ? GO:0000027 ... P60438 34330903
    34 7lv0:d (3.2) BS01 rna ? GO:0001070 ... P60723 34330903
    35 7lv0:e (3.2) BS01 rna ? GO:0000027 ... P62399 34330903
    36 7lv0:e (3.2) BS02 rna ? GO:0000027 ... P62399 34330903
    37 7lv0:f (3.2) BS01 rna ? GO:0000027 ... P0AG55 34330903
    38 7lv0:g (3.2) BS01 rna ? GO:0002181 ... P0A7R1 34330903
    39 7lv0:h (3.2) BS01 rna ? GO:0003735 ... P0A7J3 34330903
    40 7lv0:i (3.2) BS01 rna ? GO:0000027 ... P0A7J7 34330903
    41 7lv0:j (3.2) BS01 rna ? GO:0002181 ... P0AA10 34330903
    42 7lv0:k (3.2) BS01 rna ? GO:0002181 ... P0ADY3 34330903
    43 7lv0:k (3.2) BS02 rna ? GO:0002181 ... P0ADY3 34330903
    44 7lv0:l (3.2) BS01 rna ? GO:0002181 ... P02413 34330903
    45 7lv0:m (3.2) BS01 rna ? GO:0000027 ... P0ADY7 34330903
    46 7lv0:m (3.2) BS02 rna ? GO:0000027 ... P0ADY7 34330903
    47 7lv0:n (3.2) BS01 rna ? GO:0000027 ... P0AG44 34330903
    48 7lv0:o (3.2) BS01 rna ? GO:0002181 ... P0C018 34330903
    49 7lv0:o (3.2) BS02 rna ? GO:0002181 ... P0C018 34330903
    50 7lv0:p (3.2) BS01 rna ? GO:0000027 ... P0A7K6 34330903
    51 7lv0:p (3.2) BS02 rna ? GO:0000027 ... P0A7K6 34330903
    52 7lv0:q (3.2) BS01 rna ? GO:0000027 ... P0A7L3 34330903
    53 7lv0:r (3.2) BS01 rna ? GO:0002181 ... P0AG48 34330903
    54 7lv0:s (3.2) BS01 rna ? GO:0002181 ... P61175 34330903
    55 7lv0:t (3.2) BS01 rna ? GO:0000027 ... P0ADZ0 34330903
    56 7lv0:u (3.2) BS01 rna ? GO:0000027 ... P60624 34330903
    57 7lv0:v (3.2) BS01 rna ? GO:0000027 ... P68919 34330903
    58 7lv0:w (3.2) BS01 rna ? GO:0003735 ... P0A7L8 34330903
    59 7lv0:w (3.2) BS02 rna ? GO:0003735 ... P0A7L8 34330903
    60 7lv0:x (3.2) BS01 rna ? GO:0000027 ... P0A7M2 34330903
    61 7lv0:y (3.2) BS01 rna ? GO:0000027 ... P0A7M6 34330903
    62 7lv0:z (3.2) BS01 rna ? GO:0000027 ... P0AG51 34330903
    63 7lv0:z (3.2) BS02 rna ? GO:0000027 ... P0AG51 34330903
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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