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BioLiP
Download all results in tab-seperated text for 13 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7khr:C (3.62) BS01 MG 7.1.2.2 GO:0000221 ... P31404 33741963
    2 7khr:C (3.62) BS02 ADP 7.1.2.2 GO:0000221 ... P31404 33741963
    3 7khr:F (3.62) BS01 ADP ? GO:0000221 ... P31408 33741963
    4 7khr:a (3.62) BS01 MAN ? GO:0000220 ... Q29466 33741963
    5 7khr:a (3.62) BS02 WJP ? GO:0000220 ... Q29466 33741963
    6 7khr:c (3.62) BS01 WEV ? GO:0000220 ... P23956 33741963
    7 7khr:k (3.62) BS01 WEV ? GO:0000220 ... P23956 33741963
    8 7khr:k (3.62) BS02 WEV ? GO:0000220 ... P23956 33741963
    9 7khr:l (3.62) BS01 WEV ? GO:0000220 ... P23956 33741963
    10 7khr:l (3.62) BS02 WEV ? GO:0000220 ... P23956 33741963
    11 7khr:m (3.62) BS01 WEV ? GO:0000220 ... P23956 33741963
    12 7khr:o (3.62) BS01 WEV ? GO:0000220 ... P23956 33741963
    13 7khr:p (3.62) BS01 WEV ? GO:0000220 ... P23956 33741963
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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