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BioLiP
Download all results in tab-seperated text for 19 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7ega:A (4.1) BS01 dna 2.3.1.48
    2.7.11.1    		 GO:0000122 ... P21675 33795473
    2 7ega:A (4.1) BS02 dna 2.3.1.48
    2.7.11.1    		 GO:0000122 ... P21675 33795473
    3 7ega:P (4.1) BS01 dna ? GO:0000785 ... P20226 33795473
    4 7ega:P (4.1) BS02 dna ? GO:0000785 ... P20226 33795473
    5 7ega:Q (4.1) BS01 dna ? GO:0000979 ... P52655 33795473
    6 7ega:R (4.1) BS01 dna 2.3.1.48 GO:0000776 ... Q00403 33795473
    7 7ega:R (4.1) BS02 dna 2.3.1.48 GO:0000776 ... Q00403 33795473
    8 7ega:R (4.1) BS03 ZN 2.3.1.48 GO:0000776 ... Q00403 33795473
    9 7ega:T (4.1) BS01 dna 3.6.4.12 GO:0003677 ... P13984 33795473
    10 7ega:U (4.1) BS01 ZN ? GO:0001113 ... P29083 33795473
    11 7ega:o (4.1) BS01 ZN 2.7.7.6 GO:0003677 ... A0A7M4DUC2 33795473
    12 7ega:o (4.1) BS02 ZN 2.7.7.6 GO:0003677 ... A0A7M4DUC2 33795473
    13 7ega:o (4.1) BS03 MG 2.7.7.6 GO:0003677 ... A0A7M4DUC2 33795473
    14 7ega:p (4.1) BS01 ZN 2.7.7.6 GO:0000428 ... I3LGP4 33795473
    15 7ega:q (4.1) BS01 ZN ? GO:0000428 ... I3LCH3 33795473
    16 7ega:w (4.1) BS01 ZN ? GO:0000428 ... P60899 33795473
    17 7ega:w (4.1) BS02 ZN ? GO:0000428 ... P60899 33795473
    18 7ega:x (4.1) BS01 ZN ? GO:0000428 ... A0A4X1VYD0 33795473
    19 7ega:z (4.1) BS01 ZN ? GO:0003677 ... A0A4X1TRS6 33795473
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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