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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 304 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7bgi:1 (2.54) BS01 CLA ? GO:0009765 ... Q05093 N/A
    2 7bgi:1 (2.54) BS02 C7Z ? GO:0009765 ... Q05093 N/A
    3 7bgi:1 (2.54) BS03 CLA ? GO:0009765 ... Q05093 N/A
    4 7bgi:1 (2.54) BS04 CLA ? GO:0009765 ... Q05093 N/A
    5 7bgi:1 (2.54) BS05 CLA ? GO:0009765 ... Q05093 N/A
    6 7bgi:1 (2.54) BS06 CLA ? GO:0009765 ... Q05093 N/A
    7 7bgi:1 (2.54) BS07 CLA ? GO:0009765 ... Q05093 N/A
    8 7bgi:1 (2.54) BS08 CLA ? GO:0009765 ... Q05093 N/A
    9 7bgi:1 (2.54) BS09 CLA ? GO:0009765 ... Q05093 N/A
    10 7bgi:1 (2.54) BS10 CLA ? GO:0009765 ... Q05093 N/A
    11 7bgi:1 (2.54) BS11 CHL ? GO:0009765 ... Q05093 N/A
    12 7bgi:1 (2.54) BS12 CLA ? GO:0009765 ... Q05093 N/A
    13 7bgi:1 (2.54) BS13 CLA ? GO:0009765 ... Q05093 N/A
    14 7bgi:1 (2.54) BS14 CLA ? GO:0009765 ... Q05093 N/A
    15 7bgi:1 (2.54) BS15 CLA ? GO:0009765 ... Q05093 N/A
    16 7bgi:1 (2.54) BS16 CHL ? GO:0009765 ... Q05093 N/A
    17 7bgi:2 (2.54) BS01 CLA ? GO:0009765 ... A8IKC8 N/A
    18 7bgi:2 (2.54) BS02 CLA ? GO:0009765 ... A8IKC8 N/A
    19 7bgi:2 (2.54) BS03 CLA ? GO:0009765 ... A8IKC8 N/A
    20 7bgi:2 (2.54) BS04 CLA ? GO:0009765 ... A8IKC8 N/A
    21 7bgi:2 (2.54) BS05 CLA ? GO:0009765 ... A8IKC8 N/A
    22 7bgi:2 (2.54) BS06 CLA ? GO:0009765 ... A8IKC8 N/A
    23 7bgi:2 (2.54) BS07 CLA ? GO:0009765 ... A8IKC8 N/A
    24 7bgi:2 (2.54) BS08 CLA ? GO:0009765 ... A8IKC8 N/A
    25 7bgi:2 (2.54) BS09 CHL ? GO:0009765 ... A8IKC8 N/A
    26 7bgi:2 (2.54) BS10 CHL ? GO:0009765 ... A8IKC8 N/A
    27 7bgi:2 (2.54) BS11 CLA ? GO:0009765 ... A8IKC8 N/A
    28 7bgi:2 (2.54) BS12 CHL ? GO:0009765 ... A8IKC8 N/A
    29 7bgi:2 (2.54) BS13 CLA ? GO:0009765 ... A8IKC8 N/A
    30 7bgi:3 (2.54) BS01 CLA ? GO:0009765 ... Q75VY9 N/A
    31 7bgi:3 (2.54) BS02 CLA ? GO:0009765 ... Q75VY9 N/A
    32 7bgi:3 (2.54) BS03 CLA ? GO:0009765 ... Q75VY9 N/A
    33 7bgi:3 (2.54) BS04 CLA ? GO:0009765 ... Q75VY9 N/A
    34 7bgi:3 (2.54) BS05 CLA ? GO:0009765 ... Q75VY9 N/A
    35 7bgi:3 (2.54) BS06 CLA ? GO:0009765 ... Q75VY9 N/A
    36 7bgi:3 (2.54) BS07 CLA ? GO:0009765 ... Q75VY9 N/A
    37 7bgi:3 (2.54) BS08 CLA ? GO:0009765 ... Q75VY9 N/A
    38 7bgi:3 (2.54) BS09 CLA ? GO:0009765 ... Q75VY9 N/A
    39 7bgi:3 (2.54) BS10 CLA ? GO:0009765 ... Q75VY9 N/A
    40 7bgi:3 (2.54) BS11 CLA ? GO:0009765 ... Q75VY9 N/A
    41 7bgi:3 (2.54) BS12 CLA ? GO:0009765 ... Q75VY9 N/A
    42 7bgi:3 (2.54) BS13 CLA ? GO:0009765 ... Q75VY9 N/A
    43 7bgi:3 (2.54) BS14 CHL ? GO:0009765 ... Q75VY9 N/A
    44 7bgi:3 (2.54) BS15 CLA ? GO:0009765 ... Q75VY9 N/A
    45 7bgi:3 (2.54) BS16 CLA ? GO:0009765 ... Q75VY9 N/A
    46 7bgi:3 (2.54) BS17 NKP ? GO:0009765 ... Q75VY9 N/A
    47 7bgi:3 (2.54) BS18 CLA ? GO:0009765 ... Q75VY9 N/A
    48 7bgi:4 (2.54) BS01 CHL ? GO:0009765 ... Q75VZ0 N/A
    49 7bgi:4 (2.54) BS02 CLA ? GO:0009765 ... Q75VZ0 N/A
    50 7bgi:4 (2.54) BS03 CLA ? GO:0009765 ... Q75VZ0 N/A
    51 7bgi:4 (2.54) BS04 CLA ? GO:0009765 ... Q75VZ0 N/A
    52 7bgi:4 (2.54) BS05 CLA ? GO:0009765 ... Q75VZ0 N/A
    53 7bgi:4 (2.54) BS06 CLA ? GO:0009765 ... Q75VZ0 N/A
    54 7bgi:4 (2.54) BS07 CLA ? GO:0009765 ... Q75VZ0 N/A
    55 7bgi:4 (2.54) BS08 CLA ? GO:0009765 ... Q75VZ0 N/A
    56 7bgi:4 (2.54) BS09 CLA ? GO:0009765 ... Q75VZ0 N/A
    57 7bgi:4 (2.54) BS10 CHL ? GO:0009765 ... Q75VZ0 N/A
    58 7bgi:4 (2.54) BS11 CHL ? GO:0009765 ... Q75VZ0 N/A
    59 7bgi:4 (2.54) BS12 CLA ? GO:0009765 ... Q75VZ0 N/A
    60 7bgi:4 (2.54) BS13 CHL ? GO:0009765 ... Q75VZ0 N/A
    61 7bgi:4 (2.54) BS14 CLA ? GO:0009765 ... Q75VZ0 N/A
    62 7bgi:4 (2.54) BS15 CHL ? GO:0009765 ... Q75VZ0 N/A
    63 7bgi:4 (2.54) BS16 CLA ? GO:0009765 ... Q75VZ0 N/A
    64 7bgi:5 (2.54) BS01 CLA ? GO:0009765 ... Q75VY8 N/A
    65 7bgi:5 (2.54) BS02 C7Z ? GO:0009765 ... Q75VY8 N/A
    66 7bgi:5 (2.54) BS03 CLA ? GO:0009765 ... Q75VY8 N/A
    67 7bgi:5 (2.54) BS04 CLA ? GO:0009765 ... Q75VY8 N/A
    68 7bgi:5 (2.54) BS05 CLA ? GO:0009765 ... Q75VY8 N/A
    69 7bgi:5 (2.54) BS06 CLA ? GO:0009765 ... Q75VY8 N/A
    70 7bgi:5 (2.54) BS07 CLA ? GO:0009765 ... Q75VY8 N/A
    71 7bgi:5 (2.54) BS08 CLA ? GO:0009765 ... Q75VY8 N/A
    72 7bgi:5 (2.54) BS09 CLA ? GO:0009765 ... Q75VY8 N/A
    73 7bgi:5 (2.54) BS10 CLA ? GO:0009765 ... Q75VY8 N/A
    74 7bgi:5 (2.54) BS11 CLA ? GO:0009765 ... Q75VY8 N/A
    75 7bgi:5 (2.54) BS12 CHL ? GO:0009765 ... Q75VY8 N/A
    76 7bgi:5 (2.54) BS13 CHL ? GO:0009765 ... Q75VY8 N/A
    77 7bgi:5 (2.54) BS14 CLA ? GO:0009765 ... Q75VY8 N/A
    78 7bgi:5 (2.54) BS15 CLA ? GO:0009765 ... Q75VY8 N/A
    79 7bgi:5 (2.54) BS16 CLA ? GO:0009765 ... Q75VY8 N/A
    80 7bgi:5 (2.54) BS17 CHL ? GO:0009765 ... Q75VY8 N/A
    81 7bgi:5 (2.54) BS18 CLA ? GO:0009765 ... Q75VY8 N/A
    82 7bgi:5 (2.54) BS19 CLA ? GO:0009765 ... Q75VY8 N/A
    83 7bgi:5 (2.54) BS20 CLA ? GO:0009765 ... Q75VY8 N/A
    84 7bgi:5 (2.54) BS21 CLA ? GO:0009765 ... Q75VY8 N/A
    85 7bgi:6 (2.54) BS01 CLA ? GO:0009765 ... Q75VY6 N/A
    86 7bgi:6 (2.54) BS02 CLA ? GO:0009765 ... Q75VY6 N/A
    87 7bgi:6 (2.54) BS03 CLA ? GO:0009765 ... Q75VY6 N/A
    88 7bgi:6 (2.54) BS04 CLA ? GO:0009765 ... Q75VY6 N/A
    89 7bgi:6 (2.54) BS05 CLA ? GO:0009765 ... Q75VY6 N/A
    90 7bgi:6 (2.54) BS06 CLA ? GO:0009765 ... Q75VY6 N/A
    91 7bgi:6 (2.54) BS07 CLA ? GO:0009765 ... Q75VY6 N/A
    92 7bgi:6 (2.54) BS08 CLA ? GO:0009765 ... Q75VY6 N/A
    93 7bgi:6 (2.54) BS09 CLA ? GO:0009765 ... Q75VY6 N/A
    94 7bgi:6 (2.54) BS10 CLA ? GO:0009765 ... Q75VY6 N/A
    95 7bgi:6 (2.54) BS11 CLA ? GO:0009765 ... Q75VY6 N/A
    96 7bgi:6 (2.54) BS12 CLA ? GO:0009765 ... Q75VY6 N/A
    97 7bgi:6 (2.54) BS13 CHL ? GO:0009765 ... Q75VY6 N/A
    98 7bgi:6 (2.54) BS14 CHL ? GO:0009765 ... Q75VY6 N/A
    99 7bgi:6 (2.54) BS15 CLA ? GO:0009765 ... Q75VY6 N/A
    100 7bgi:6 (2.54) BS16 CHL ? GO:0009765 ... Q75VY6 N/A
    101 7bgi:6 (2.54) BS17 CLA ? GO:0009765 ... Q75VY6 N/A
    102 7bgi:6 (2.54) BS18 CHL ? GO:0009765 ... Q75VY6 N/A
    103 7bgi:6 (2.54) BS19 CLA ? GO:0009765 ... Q75VY6 N/A
    104 7bgi:6 (2.54) BS20 CLA ? GO:0009765 ... Q75VY6 N/A
    105 7bgi:7 (2.54) BS01 CLA ? GO:0009765 ... Q84Y02 N/A
    106 7bgi:7 (2.54) BS02 CLA ? GO:0009765 ... Q84Y02 N/A
    107 7bgi:7 (2.54) BS03 CLA ? GO:0009765 ... Q84Y02 N/A
    108 7bgi:7 (2.54) BS04 CLA ? GO:0009765 ... Q84Y02 N/A
    109 7bgi:7 (2.54) BS05 CLA ? GO:0009765 ... Q84Y02 N/A
    110 7bgi:7 (2.54) BS06 CLA ? GO:0009765 ... Q84Y02 N/A
    111 7bgi:7 (2.54) BS07 CLA ? GO:0009765 ... Q84Y02 N/A
    112 7bgi:7 (2.54) BS08 CLA ? GO:0009765 ... Q84Y02 N/A
    113 7bgi:7 (2.54) BS09 CLA ? GO:0009765 ... Q84Y02 N/A
    114 7bgi:7 (2.54) BS10 CHL ? GO:0009765 ... Q84Y02 N/A
    115 7bgi:7 (2.54) BS11 CLA ? GO:0009765 ... Q84Y02 N/A
    116 7bgi:7 (2.54) BS12 CLA ? GO:0009765 ... Q84Y02 N/A
    117 7bgi:7 (2.54) BS13 CLA ? GO:0009765 ... Q84Y02 N/A
    118 7bgi:7 (2.54) BS14 CLA ? GO:0009765 ... Q84Y02 N/A
    119 7bgi:7 (2.54) BS15 CLA ? GO:0009765 ... Q84Y02 N/A
    120 7bgi:7 (2.54) BS16 CLA ? GO:0009765 ... Q84Y02 N/A
    121 7bgi:7 (2.54) BS17 CLA ? GO:0009765 ... Q84Y02 N/A
    122 7bgi:8 (2.54) BS01 CHL ? GO:0009765 ... Q75VY7 N/A
    123 7bgi:8 (2.54) BS02 CLA ? GO:0009765 ... Q75VY7 N/A
    124 7bgi:8 (2.54) BS03 CLA ? GO:0009765 ... Q75VY7 N/A
    125 7bgi:8 (2.54) BS04 CLA ? GO:0009765 ... Q75VY7 N/A
    126 7bgi:8 (2.54) BS05 CLA ? GO:0009765 ... Q75VY7 N/A
    127 7bgi:8 (2.54) BS06 CLA ? GO:0009765 ... Q75VY7 N/A
    128 7bgi:8 (2.54) BS07 CLA ? GO:0009765 ... Q75VY7 N/A
    129 7bgi:8 (2.54) BS08 CLA ? GO:0009765 ... Q75VY7 N/A
    130 7bgi:8 (2.54) BS09 CLA ? GO:0009765 ... Q75VY7 N/A
    131 7bgi:8 (2.54) BS10 CHL ? GO:0009765 ... Q75VY7 N/A
    132 7bgi:8 (2.54) BS11 CLA ? GO:0009765 ... Q75VY7 N/A
    133 7bgi:8 (2.54) BS12 CLA ? GO:0009765 ... Q75VY7 N/A
    134 7bgi:8 (2.54) BS13 CHL ? GO:0009765 ... Q75VY7 N/A
    135 7bgi:8 (2.54) BS14 CLA ? GO:0009765 ... Q75VY7 N/A
    136 7bgi:9 (2.54) BS01 CLA ? GO:0009765 ... A8ITV3 N/A
    137 7bgi:9 (2.54) BS02 CHL ? GO:0009765 ... A8ITV3 N/A
    138 7bgi:9 (2.54) BS03 CLA ? GO:0009765 ... A8ITV3 N/A
    139 7bgi:9 (2.54) BS04 CLA ? GO:0009765 ... A8ITV3 N/A
    140 7bgi:9 (2.54) BS05 CLA ? GO:0009765 ... A8ITV3 N/A
    141 7bgi:9 (2.54) BS06 CLA ? GO:0009765 ... A8ITV3 N/A
    142 7bgi:9 (2.54) BS07 CLA ? GO:0009765 ... A8ITV3 N/A
    143 7bgi:9 (2.54) BS08 CLA ? GO:0009765 ... A8ITV3 N/A
    144 7bgi:9 (2.54) BS09 CLA ? GO:0009765 ... A8ITV3 N/A
    145 7bgi:9 (2.54) BS10 CLA ? GO:0009765 ... A8ITV3 N/A
    146 7bgi:9 (2.54) BS11 CLA ? GO:0009765 ... A8ITV3 N/A
    147 7bgi:9 (2.54) BS12 CHL ? GO:0009765 ... A8ITV3 N/A
    148 7bgi:9 (2.54) BS13 CLA ? GO:0009765 ... A8ITV3 N/A
    149 7bgi:9 (2.54) BS14 CHL ? GO:0009765 ... A8ITV3 N/A
    150 7bgi:A (2.54) BS01 CL0 1.97.1.12 GO:0000287 ... P12154 N/A
    151 7bgi:A (2.54) BS02 CLA 1.97.1.12 GO:0000287 ... P12154 N/A
    152 7bgi:A (2.54) BS03 CLA 1.97.1.12 GO:0000287 ... P12154 N/A
    153 7bgi:A (2.54) BS04 CLA 1.97.1.12 GO:0000287 ... P12154 N/A
    154 7bgi:A (2.54) BS05 CLA 1.97.1.12 GO:0000287 ... P12154 N/A
    155 7bgi:A (2.54) BS06 CLA 1.97.1.12 GO:0000287 ... P12154 N/A
    156 7bgi:A (2.54) BS07 CLA 1.97.1.12 GO:0000287 ... P12154 N/A
    157 7bgi:A (2.54) BS08 CLA 1.97.1.12 GO:0000287 ... P12154 N/A
    158 7bgi:A (2.54) BS09 CLA 1.97.1.12 GO:0000287 ... P12154 N/A
    159 7bgi:A (2.54) BS10 CLA 1.97.1.12 GO:0000287 ... P12154 N/A
    160 7bgi:A (2.54) BS11 CLA 1.97.1.12 GO:0000287 ... P12154 N/A
    161 7bgi:A (2.54) BS12 CLA 1.97.1.12 GO:0000287 ... P12154 N/A
    162 7bgi:A (2.54) BS13 CLA 1.97.1.12 GO:0000287 ... P12154 N/A
    163 7bgi:A (2.54) BS14 CLA 1.97.1.12 GO:0000287 ... P12154 N/A
    164 7bgi:A (2.54) BS15 CLA 1.97.1.12 GO:0000287 ... P12154 N/A
    165 7bgi:A (2.54) BS16 CLA 1.97.1.12 GO:0000287 ... P12154 N/A
    166 7bgi:A (2.54) BS17 CLA 1.97.1.12 GO:0000287 ... P12154 N/A
    167 7bgi:A (2.54) BS18 CLA 1.97.1.12 GO:0000287 ... P12154 N/A
    168 7bgi:A (2.54) BS19 CLA 1.97.1.12 GO:0000287 ... P12154 N/A
    169 7bgi:A (2.54) BS20 CLA 1.97.1.12 GO:0000287 ... P12154 N/A
    170 7bgi:A (2.54) BS21 CLA 1.97.1.12 GO:0000287 ... P12154 N/A
    171 7bgi:A (2.54) BS22 CLA 1.97.1.12 GO:0000287 ... P12154 N/A
    172 7bgi:A (2.54) BS23 CLA 1.97.1.12 GO:0000287 ... P12154 N/A
    173 7bgi:A (2.54) BS24 CLA 1.97.1.12 GO:0000287 ... P12154 N/A
    174 7bgi:A (2.54) BS25 CLA 1.97.1.12 GO:0000287 ... P12154 N/A
    175 7bgi:A (2.54) BS26 CLA 1.97.1.12 GO:0000287 ... P12154 N/A
    176 7bgi:A (2.54) BS27 CLA 1.97.1.12 GO:0000287 ... P12154 N/A
    177 7bgi:A (2.54) BS28 CLA 1.97.1.12 GO:0000287 ... P12154 N/A
    178 7bgi:A (2.54) BS29 CLA 1.97.1.12 GO:0000287 ... P12154 N/A
    179 7bgi:A (2.54) BS30 CLA 1.97.1.12 GO:0000287 ... P12154 N/A
    180 7bgi:A (2.54) BS31 CLA 1.97.1.12 GO:0000287 ... P12154 N/A
    181 7bgi:A (2.54) BS32 CLA 1.97.1.12 GO:0000287 ... P12154 N/A
    182 7bgi:A (2.54) BS33 CLA 1.97.1.12 GO:0000287 ... P12154 N/A
    183 7bgi:A (2.54) BS34 CLA 1.97.1.12 GO:0000287 ... P12154 N/A
    184 7bgi:A (2.54) BS35 CLA 1.97.1.12 GO:0000287 ... P12154 N/A
    185 7bgi:A (2.54) BS36 CLA 1.97.1.12 GO:0000287 ... P12154 N/A
    186 7bgi:A (2.54) BS37 CLA 1.97.1.12 GO:0000287 ... P12154 N/A
    187 7bgi:A (2.54) BS38 CLA 1.97.1.12 GO:0000287 ... P12154 N/A
    188 7bgi:A (2.54) BS39 CLA 1.97.1.12 GO:0000287 ... P12154 N/A
    189 7bgi:A (2.54) BS40 CLA 1.97.1.12 GO:0000287 ... P12154 N/A
    190 7bgi:A (2.54) BS41 CLA 1.97.1.12 GO:0000287 ... P12154 N/A
    191 7bgi:A (2.54) BS42 PQN 1.97.1.12 GO:0000287 ... P12154 N/A
    192 7bgi:A (2.54) BS43 SF4 1.97.1.12 GO:0000287 ... P12154 N/A
    193 7bgi:A (2.54) BS44 CLA 1.97.1.12 GO:0000287 ... P12154 N/A
    194 7bgi:A (2.54) BS45 CLA 1.97.1.12 GO:0000287 ... P12154 N/A
    195 7bgi:A (2.54) BS46 CLA 1.97.1.12 GO:0000287 ... P12154 N/A
    196 7bgi:A (2.54) BS47 CLA 1.97.1.12 GO:0000287 ... P12154 N/A
    197 7bgi:A (2.54) BS48 CLA 1.97.1.12 GO:0000287 ... P12154 N/A
    198 7bgi:A (2.54) BS49 CLA 1.97.1.12 GO:0000287 ... P12154 N/A
    199 7bgi:A (2.54) BS50 CLA 1.97.1.12 GO:0000287 ... P12154 N/A
    200 7bgi:A (2.54) BS51 CLA 1.97.1.12 GO:0000287 ... P12154 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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