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BioLiP
Download all results in tab-seperated text for 40 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7a1g:A (3.0) BS01 rna ? GO:0000054 ... P05750 33289941
    2 7a1g:B (3.0) BS01 rna ? GO:0000028 ... P26783 33289941
    3 7a1g:C (3.0) BS01 rna ? N/A Q08745 33289941
    4 7a1g:D (3.0) BS01 rna ? GO:0003735 ... P48589 33289941
    5 7a1g:E (3.0) BS01 rna ? GO:0003723 ... Q01855 33289941
    6 7a1g:F (3.0) BS01 rna ? GO:0000462 ... P0CX51 33289941
    7 7a1g:H (3.0) BS01 rna ? GO:0000028 ... P14127 33289941
    8 7a1g:I (3.0) BS01 rna ? GO:0000054 ... P0CX55 33289941
    9 7a1g:J (3.0) BS01 rna ? GO:0000028 ... P07280 33289941
    10 7a1g:K (3.0) BS01 rna ? GO:0003723 ... P38701 33289941
    11 7a1g:L (3.0) BS01 rna ? N/A Q3E792 33289941
    12 7a1g:M (3.0) BS01 rna ? GO:0002181 ... P41057 33289941
    13 7a1g:M (3.0) BS02 ZN ? GO:0002181 ... P41057 33289941
    14 7a1g:N (3.0) BS01 rna ? GO:0003735 ... P05759 33289941
    15 7a1g:N (3.0) BS02 ZN ? GO:0003735 ... P05759 33289941
    16 7a1g:O (3.0) BS01 rna ? GO:0001965 ... P38011 33289941
    17 7a1g:P (3.0) BS01 rna ? GO:0003735 ... P32905 33289941
    18 7a1g:Q (3.0) BS01 rna ? GO:0000462 ... P33442 33289941
    19 7a1g:R (3.0) BS01 rna ? GO:0003723 ... P25443 33289941
    20 7a1g:S (3.0) BS01 rna ? GO:0002181 ... P0CX35 33289941
    21 7a1g:T (3.0) BS01 rna ? GO:0000462 ... P0CX37 33289941
    22 7a1g:U (3.0) BS01 rna ? GO:0002181 ... P26786 33289941
    23 7a1g:V (3.0) BS01 rna ? GO:0000462 ... P0CX39 33289941
    24 7a1g:W (3.0) BS01 rna ? GO:0000462 ... O13516 33289941
    25 7a1g:X (3.0) BS01 rna ? GO:0000028 ... P0CX47 33289941
    26 7a1g:Y (3.0) BS01 rna ? GO:0000462 ... P05756 33289941
    27 7a1g:Z (3.0) BS01 rna ? GO:0000028 ... P39516 33289941
    28 7a1g:b (3.0) BS01 rna ? GO:0002181 ... P0C0W1 33289941
    29 7a1g:c (3.0) BS01 rna ? GO:0000462 ... P0CX29 33289941
    30 7a1g:d (3.0) BS01 rna ? GO:0000462 ... P0CX31 33289941
    31 7a1g:e (3.0) BS01 rna ? GO:0003735 ... P39939 33289941
    32 7a1g:f (3.0) BS01 rna ? GO:0000028 ... P35997 33289941
    33 7a1g:g (3.0) BS01 rna ? GO:0002181 ... P0CX33 33289941
    34 7a1g:h (3.0) BS01 rna ? GO:0000028 ... Q3E7X9 33289941
    35 7a1g:x (3.0) BS01 rna ? GO:0000054 ... Q03195 33289941
    36 7a1g:x (3.0) BS02 SF4 ? GO:0000054 ... Q03195 33289941
    37 7a1g:x (3.0) BS03 SF4 ? GO:0000054 ... Q03195 33289941
    38 7a1g:x (3.0) BS04 ADP ? GO:0000054 ... Q03195 33289941
    39 7a1g:x (3.0) BS05 MG ? GO:0000054 ... Q03195 33289941
    40 7a1g:z (3.0) BS01 rna ? GO:0000184 ... Q05775 33289941
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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