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BioLiP
Download all results in tab-seperated text for 104 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6ydw:AB (4.2) BS01 rna ? GO:0003735 ... F1S001 32602580
    2 6ydw:AB (4.2) BS02 MG ? GO:0003735 ... F1S001 32602580
    3 6ydw:AC (4.2) BS01 rna ? GO:0005739 ... A0A287ANU4 32602580
    4 6ydw:AE (4.2) BS01 rna ? GO:0003723 ... F1SU66 32602580
    5 6ydw:AF (4.2) BS01 rna N/A GO:0003735 ... N/A 32602580
    6 6ydw:AG (4.2) BS01 rna ? GO:0000028 ... A0A286ZJ25 32602580
    7 6ydw:AI (4.2) BS01 rna ? GO:0003723 ... I3LU08 32602580
    8 6ydw:AJ (4.2) BS01 rna ? GO:0005739 ... F1RUU2 32602580
    9 6ydw:AK (4.2) BS01 rna ? GO:0003735 ... A0A286ZJJ6 32602580
    10 6ydw:AL (4.2) BS01 rna ? GO:0003735 ... A0A0M3KL52 32602580
    11 6ydw:AN (4.2) BS01 rna ? GO:0003735 ... A0A0M3KL53 32602580
    12 6ydw:AO (4.2) BS01 rna ? GO:0003735 ... A0A287BMP0 32602580
    13 6ydw:AP (4.2) BS01 rna ? GO:0003735 ... A0A480JTD7 32602580
    14 6ydw:AQ (4.2) BS01 rna ? GO:0003735 ... A0A8D1UDM1 32602580
    15 6ydw:AR (4.2) BS01 rna ? GO:0003735 ... A0A0M3KL54 32602580
    16 6ydw:AR (4.2) BS02 ZN ? GO:0003735 ... A0A0M3KL54 32602580
    17 6ydw:AU (4.2) BS01 rna ? GO:0003735 ... A0A286ZNB3 32602580
    18 6ydw:Ab (4.2) BS01 rna ? GO:0003735 ... A0A287AEW3 32602580
    19 6ydw:Ac (4.2) BS01 rna ? GO:0003735 ... A0A0M3KL55 32602580
    20 6ydw:Ac (4.2) BS02 ZN ? GO:0003735 ... A0A0M3KL55 32602580
    21 6ydw:Ad (4.2) BS01 rna ? GO:0005763 ... A0A287AY01 32602580
    22 6ydw:Ae (4.2) BS01 rna ? N/A A0A5G2R5D6 32602580
    23 6ydw:Ag (4.2) BS01 rna ? GO:0005654 ... A0A8D1XNL0 32602580
    24 6ydw:Ag (4.2) BS02 GTP ? GO:0005654 ... A0A8D1XNL0 32602580
    25 6ydw:Ah (4.2) BS01 peptide ? GO:0003735 ... F1RME2 32602580
    26 6ydw:Ai (4.2) BS01 rna ? N/A A0A4X1V2H3 32602580
    27 6ydw:Aj (4.2) BS01 rna ? GO:0003735 ... A0A287AVS9 32602580
    28 6ydw:Ak (4.2) BS01 rna ? GO:0003735 ... F1SG95 32602580
    29 6ydw:Am (4.2) BS01 rna ? GO:0005739 ... A0A4X1SZV4 32602580
    30 6ydw:An (4.2) BS01 rna ? GO:0005634 ... A0A8D2A802 32602580
    31 6ydw:An (4.2) BS02 rna ? GO:0005634 ... A0A8D2A802 32602580
    32 6ydw:Ap (4.2) BS01 rna ? GO:0003735 ... Q767K8 32602580
    33 6ydw:Ap (4.2) BS02 ZN ? GO:0003735 ... Q767K8 32602580
    34 6ydw:B0 (4.2) BS01 rna ? GO:0003735 ... A0A4X1U0F6 32602580
    35 6ydw:B1 (4.2) BS01 rna ? GO:0003735 ... A0A286ZTW8 32602580
    36 6ydw:B2 (4.2) BS01 rna ? GO:0003735 ... F1SGC7 32602580
    37 6ydw:B3 (4.2) BS01 rna ? GO:0003735 ... A0A8D1MIP3 32602580
    38 6ydw:B4 (4.2) BS01 rna ? GO:0003735 ... A0A4X1ULI6 32602580
    39 6ydw:B5 (4.2) BS01 rna ? GO:0003735 ... I3LTC4 32602580
    40 6ydw:B5 (4.2) BS02 ZN ? GO:0003735 ... I3LTC4 32602580
    41 6ydw:B6 (4.2) BS01 rna ? GO:0003735 ... A0A4X1TLP9 32602580
    42 6ydw:B7 (4.2) BS01 rna ? GO:0003735 ... A0A4X1UFR4 32602580
    43 6ydw:B8 (4.2) BS01 rna ? GO:0003735 ... F1SVC5 32602580
    44 6ydw:B9 (4.2) BS01 rna ? GO:0003735 ... A0A287A731 32602580
    45 6ydw:B9 (4.2) BS02 ZN ? GO:0003735 ... A0A287A731 32602580
    46 6ydw:BC (4.2) BS01 rna ? GO:0003723 ... Q96RP9 32602580
    47 6ydw:BC (4.2) BS02 rna ? GO:0003723 ... Q96RP9 32602580
    48 6ydw:BC (4.2) BS03 rna ? GO:0003723 ... Q96RP9 32602580
    49 6ydw:BC (4.2) BS04 GNP ? GO:0003723 ... Q96RP9 32602580
    50 6ydw:BC (4.2) BS05 MG ? GO:0003723 ... Q96RP9 32602580
    51 6ydw:BD (4.2) BS01 rna ? GO:0003735 ... F1RRN2 32602580
    52 6ydw:BD (4.2) BS02 MG ? GO:0003735 ... F1RRN2 32602580
    53 6ydw:BE (4.2) BS01 rna ? GO:0003735 ... A0A140UHW4 32602580
    54 6ydw:BF (4.2) BS01 rna ? GO:0003735 ... A0A287B9C4 32602580
    55 6ydw:BI (4.2) BS01 rna ? GO:0003735 ... I3LR45 32602580
    56 6ydw:BJ (4.2) BS01 peptide ? GO:0005840 ... F1RWJ0 32602580
    57 6ydw:BJ (4.2) BS02 peptide ? GO:0005840 ... F1RWJ0 32602580
    58 6ydw:BJ (4.2) BS03 peptide ? GO:0005840 ... F1RWJ0 32602580
    59 6ydw:BJ (4.2) BS04 peptide ? GO:0005840 ... F1RWJ0 32602580
    60 6ydw:BJ (4.2) BS05 rna ? GO:0005840 ... F1RWJ0 32602580
    61 6ydw:BK (4.2) BS01 rna ? GO:0003735 ... F1RU54 32602580
    62 6ydw:BN (4.2) BS01 rna ? GO:0003729 ... K7GP19 32602580
    63 6ydw:BO (4.2) BS01 rna ? GO:0003735 ... A0A287BMZ6 32602580
    64 6ydw:BO (4.2) BS02 rna ? GO:0003735 ... A0A287BMZ6 32602580
    65 6ydw:BP (4.2) BS01 rna N/A GO:0003735 ... N/A 32602580
    66 6ydw:BP (4.2) BS02 MG N/A GO:0003735 ... N/A 32602580
    67 6ydw:BQ (4.2) BS01 rna ? GO:0003735 ... F1RI89 32602580
    68 6ydw:BQ (4.2) BS02 MG ? GO:0003735 ... F1RI89 32602580
    69 6ydw:BR (4.2) BS01 rna ? GO:0003735 ... F1RMQ4 32602580
    70 6ydw:BS (4.2) BS01 rna ? GO:0003735 ... A0A286ZNK1 32602580
    71 6ydw:BS (4.2) BS02 rna ? GO:0003735 ... A0A286ZNK1 32602580
    72 6ydw:BT (4.2) BS01 rna ? GO:0003735 ... I3LNJ0 32602580
    73 6ydw:BU (4.2) BS01 rna ? GO:0003735 ... A0A286ZU56 32602580
    74 6ydw:BV (4.2) BS01 rna ? GO:0003723 ... F1RY70 32602580
    75 6ydw:BW (4.2) BS01 rna ? GO:0003735 ... A0A4X1TXR4 32602580
    76 6ydw:BX (4.2) BS01 rna N/A GO:0003735 ... N/A 32602580
    77 6ydw:BY (4.2) BS01 rna ? GO:0003723 ... F1RHJ1 32602580
    78 6ydw:Ba (4.2) BS01 rna ? GO:0003735 ... A0A287BIV6 32602580
    79 6ydw:Bb (4.2) BS01 rna ? GO:0005739 ... F1RW03 32602580
    80 6ydw:Bb (4.2) BS02 rna ? GO:0005739 ... F1RW03 32602580
    81 6ydw:Bd (4.2) BS01 rna ? GO:0005739 ... A0A286ZP98 32602580
    82 6ydw:Bd (4.2) BS02 rna ? GO:0005739 ... A0A286ZP98 32602580
    83 6ydw:Be (4.2) BS01 rna ? GO:0003735 ... A0A8D1F1K9 32602580
    84 6ydw:Be (4.2) BS02 MG ? GO:0003735 ... A0A8D1F1K9 32602580
    85 6ydw:Bf (4.2) BS01 rna ? GO:0005739 ... A0A287BQA1 32602580
    86 6ydw:Bg (4.2) BS01 rna ? GO:0003735 ... F1S8U4 32602580
    87 6ydw:Bh (4.2) BS01 rna ? GO:0003723 ... F1SR64 32602580
    88 6ydw:Bi (4.2) BS01 rna ? GO:0005739 ... I3LGM5 32602580
    89 6ydw:Bj (4.2) BS01 rna ? GO:0003735 ... F1SRT0 32602580
    90 6ydw:Bk (4.2) BS01 rna ? GO:0005739 ... A0A480J9Z6 32602580
    91 6ydw:Bk (4.2) BS02 rna ? GO:0005739 ... A0A480J9Z6 32602580
    92 6ydw:Bl (4.2) BS01 rna ? GO:0003735 ... A0A0R4J8D6 32602580
    93 6ydw:Bn (4.2) BS01 rna ? GO:0003735 ... A0A8D1P1C8 32602580
    94 6ydw:Bo (4.2) BS01 rna ? GO:0003735 ... F1S9B7 32602580
    95 6ydw:Bp (4.2) BS01 rna ? GO:0005739 ... A0A341D604 32602580
    96 6ydw:Bq (4.2) BS01 rna ? N/A I3LN63 32602580
    97 6ydw:Bt (4.2) BS01 rna ? GO:0003735 ... A0A287BP93 32602580
    98 6ydw:Bt (4.2) BS02 MG ? GO:0003735 ... A0A287BP93 32602580
    99 6ydw:Bv (4.2) BS01 rna ? GO:0005634 ... A0A286ZXA6 32602580
    100 6ydw:Bw (4.2) BS01 rna ? GO:0003735 ... A0A480QIM3 32602580
    101 6ydw:Bx (4.2) BS01 rna ? GO:0003735 ... F1RRH6 32602580
    102 6ydw:Bx (4.2) BS02 ZN ? GO:0003735 ... F1RRH6 32602580
    103 6ydw:CL (4.2) BS01 peptide ? GO:0003735 ... A0A4X1U6S6 32602580
    104 6ydw:CL (4.2) BS02 peptide ? GO:0003735 ... A0A4X1U6S6 32602580
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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