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BioLiP
Download all results in tab-seperated text for 59 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6y69:0 (2.86) BS01 rna ? GO:0000027 ... P0A7N4 32601485
    2 6y69:1 (2.86) BS01 rna ? GO:0000027 ... P0A7N9 32601485
    3 6y69:2 (2.86) BS01 rna ? GO:0002181 ... P0A7P5 32601485
    4 6y69:3 (2.86) BS01 rna ? GO:0002181 ... P0A7Q1 32601485
    5 6y69:4 (2.86) BS01 rna ? GO:0002181 ... P0A7Q6 32601485
    6 6y69:6 (2.86) BS01 rna ? GO:0002181 ... P0A7M9 32601485
    7 6y69:C (2.86) BS01 rna ? GO:0000027 ... P60422 32601485
    8 6y69:D (2.86) BS01 rna ? GO:0000027 ... P60438 32601485
    9 6y69:E (2.86) BS01 rna ? GO:0001070 ... P60723 32601485
    10 6y69:F (2.86) BS01 rna ? GO:0000027 ... P62399 32601485
    11 6y69:F (2.86) BS02 rna ? GO:0000027 ... P62399 32601485
    12 6y69:G (2.86) BS01 rna ? GO:0000027 ... P0AG55 32601485
    13 6y69:J (2.86) BS01 rna ? GO:0002181 ... P0AA10 32601485
    14 6y69:K (2.86) BS01 rna ? GO:0002181 ... P0ADY3 32601485
    15 6y69:L (2.86) BS01 rna ? GO:0002181 ... P02413 32601485
    16 6y69:M (2.86) BS01 rna ? GO:0000027 ... P0ADY7 32601485
    17 6y69:M (2.86) BS02 rna ? GO:0000027 ... P0ADY7 32601485
    18 6y69:N (2.86) BS01 rna ? GO:0000027 ... P0AG44 32601485
    19 6y69:O (2.86) BS01 rna ? GO:0002181 ... P0C018 32601485
    20 6y69:O (2.86) BS02 rna ? GO:0002181 ... P0C018 32601485
    21 6y69:P (2.86) BS01 rna ? GO:0000027 ... P0A7K6 32601485
    22 6y69:P (2.86) BS02 rna ? GO:0000027 ... P0A7K6 32601485
    23 6y69:Q (2.86) BS01 rna ? GO:0000027 ... P0A7L3 32601485
    24 6y69:R (2.86) BS01 rna ? GO:0002181 ... P0AG48 32601485
    25 6y69:S (2.86) BS01 rna ? GO:0002181 ... P61175 32601485
    26 6y69:T (2.86) BS01 rna ? GO:0000027 ... P0ADZ0 32601485
    27 6y69:U (2.86) BS01 rna ? GO:0000027 ... P60624 32601485
    28 6y69:V (2.86) BS01 rna ? GO:0000027 ... P68919 32601485
    29 6y69:V (2.86) BS02 rna ? GO:0000027 ... P68919 32601485
    30 6y69:W (2.86) BS01 rna ? GO:0003735 ... P0A7L8 32601485
    31 6y69:W (2.86) BS02 rna ? GO:0003735 ... P0A7L8 32601485
    32 6y69:X (2.86) BS01 rna ? GO:0000027 ... P0A7M2 32601485
    33 6y69:Y (2.86) BS01 rna ? GO:0000027 ... P0A7M6 32601485
    34 6y69:Z (2.86) BS01 rna ? GO:0000027 ... P0AG51 32601485
    35 6y69:Z (2.86) BS02 rna ? GO:0000027 ... P0AG51 32601485
    36 6y69:b (2.86) BS01 rna ? GO:0000028 ... P0A7V0 32601485
    37 6y69:c (2.86) BS01 rna ? GO:0003676 ... P0A7V3 32601485
    38 6y69:d (2.86) BS01 rna ? GO:0000028 ... P0A7V8 32601485
    39 6y69:e (2.86) BS01 rna ? GO:0000028 ... P0A7W1 32601485
    40 6y69:f (2.86) BS01 rna ? GO:0003735 ... P02358 32601485
    41 6y69:g (2.86) BS01 rna ? GO:0003723 ... P02359 32601485
    42 6y69:g (2.86) BS02 rna ? GO:0003723 ... P02359 32601485
    43 6y69:h (2.86) BS01 rna ? GO:0000028 ... P0A7W7 32601485
    44 6y69:i (2.86) BS01 rna ? GO:0000049 ... P0A7X3 32601485
    45 6y69:j (2.86) BS01 rna ? GO:0000049 ... P0A7R5 32601485
    46 6y69:k (2.86) BS01 rna ? GO:0002181 ... P0A7R9 32601485
    47 6y69:l (2.86) BS01 rna ? GO:0000049 ... P0A7S3 32601485
    48 6y69:m (2.86) BS01 rna ? GO:0000049 ... P0A7S9 32601485
    49 6y69:n (2.86) BS01 rna ? GO:0003735 ... P0AG59 32601485
    50 6y69:o (2.86) BS01 rna ? GO:0000028 ... P0ADZ4 32601485
    51 6y69:o (2.86) BS02 rna ? GO:0000028 ... P0ADZ4 32601485
    52 6y69:p (2.86) BS01 rna ? GO:0000028 ... P0A7T3 32601485
    53 6y69:q (2.86) BS01 rna ? GO:0000028 ... P0AG63 32601485
    54 6y69:r (2.86) BS01 rna ? GO:0003735 ... P0A7T7 32601485
    55 6y69:s (2.86) BS01 rna ? GO:0003723 ... P0A7U3 32601485
    56 6y69:t (2.86) BS01 rna ? GO:0000028 ... P0A7U7 32601485
    57 6y69:u (2.86) BS01 rna ? GO:0000028 ... P68679 32601485
    58 6y69:x (2.86) BS01 rna ? GO:0005515 ... P0AFX0 32601485
    59 6y69:x (2.86) BS02 rna ? GO:0005515 ... P0AFX0 32601485
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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