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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 282 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6xhv:10 (2.4) BS01 rna ? GO:0003735 ... P60493 33462493
    2 6xhv:10 (2.4) BS02 rna ? GO:0003735 ... P60493 33462493
    3 6xhv:10 (2.4) BS03 rna ? GO:0003735 ... P60493 33462493
    4 6xhv:10 (2.4) BS04 MG ? GO:0003735 ... P60493 33462493
    5 6xhv:10 (2.4) BS05 MG ? GO:0003735 ... P60493 33462493
    6 6xhv:10 (2.4) BS06 MG ? GO:0003735 ... P60493 33462493
    7 6xhv:11 (2.4) BS01 rna ? GO:0003735 ... P60494 33462493
    8 6xhv:11 (2.4) BS02 rna ? GO:0003735 ... P60494 33462493
    9 6xhv:11 (2.4) BS03 MG ? GO:0003735 ... P60494 33462493
    10 6xhv:12 (2.4) BS01 rna ? GO:0003735 ... Q5SHP6 33462493
    11 6xhv:12 (2.4) BS02 MG ? GO:0003735 ... Q5SHP6 33462493
    12 6xhv:13 (2.4) BS01 rna ? GO:0003735 ... Q5SHQ6 33462493
    13 6xhv:13 (2.4) BS02 rna ? GO:0003735 ... Q5SHQ6 33462493
    14 6xhv:13 (2.4) BS03 MG ? GO:0003735 ... Q5SHQ6 33462493
    15 6xhv:13 (2.4) BS04 MG ? GO:0003735 ... Q5SHQ6 33462493
    16 6xhv:14 (2.4) BS01 rna ? GO:0003735 ... Q5SJE1 33462493
    17 6xhv:14 (2.4) BS02 ZN ? GO:0003735 ... Q5SJE1 33462493
    18 6xhv:15 (2.4) BS01 rna ? GO:0003735 ... P80339 33462493
    19 6xhv:15 (2.4) BS02 MG ? GO:0003735 ... P80339 33462493
    20 6xhv:15 (2.4) BS03 MG ? GO:0003735 ... P80339 33462493
    21 6xhv:15 (2.4) BS04 ZN ? GO:0003735 ... P80339 33462493
    22 6xhv:16 (2.4) BS01 rna ? GO:0000049 ... P35871 33462493
    23 6xhv:16 (2.4) BS02 MG ? GO:0000049 ... P35871 33462493
    24 6xhv:16 (2.4) BS03 MG ? GO:0000049 ... P35871 33462493
    25 6xhv:16 (2.4) BS04 ZN ? GO:0000049 ... P35871 33462493
    26 6xhv:17 (2.4) BS01 rna ? GO:0003735 ... P80340 33462493
    27 6xhv:17 (2.4) BS02 MG ? GO:0003735 ... P80340 33462493
    28 6xhv:18 (2.4) BS01 rna ? GO:0003735 ... Q5SKU1 33462493
    29 6xhv:18 (2.4) BS02 MG ? GO:0003735 ... Q5SKU1 33462493
    30 6xhv:18 (2.4) BS03 MG ? GO:0003735 ... Q5SKU1 33462493
    31 6xhv:19 (2.4) BS01 rna ? GO:0003735 ... Q5SHR2 33462493
    32 6xhv:19 (2.4) BS02 ZN ? GO:0003735 ... Q5SHR2 33462493
    33 6xhv:1D (2.4) BS01 rna ? GO:0002181 ... P60405 33462493
    34 6xhv:1D (2.4) BS02 rna ? GO:0002181 ... P60405 33462493
    35 6xhv:1D (2.4) BS03 MG ? GO:0002181 ... P60405 33462493
    36 6xhv:1D (2.4) BS04 MG ? GO:0002181 ... P60405 33462493
    37 6xhv:1D (2.4) BS05 MG ? GO:0002181 ... P60405 33462493
    38 6xhv:1D (2.4) BS06 MG ? GO:0002181 ... P60405 33462493
    39 6xhv:1D (2.4) BS07 MG ? GO:0002181 ... P60405 33462493
    40 6xhv:1D (2.4) BS08 MG ? GO:0002181 ... P60405 33462493
    41 6xhv:1D (2.4) BS09 MG ? GO:0002181 ... P60405 33462493
    42 6xhv:1D (2.4) BS10 MG ? GO:0002181 ... P60405 33462493
    43 6xhv:1D (2.4) BS11 MG ? GO:0002181 ... P60405 33462493
    44 6xhv:1D (2.4) BS12 MG ? GO:0002181 ... P60405 33462493
    45 6xhv:1D (2.4) BS13 MG ? GO:0002181 ... P60405 33462493
    46 6xhv:1E (2.4) BS01 rna ? GO:0003735 ... Q5SHN8 33462493
    47 6xhv:1E (2.4) BS02 MG ? GO:0003735 ... Q5SHN8 33462493
    48 6xhv:1E (2.4) BS03 MG ? GO:0003735 ... Q5SHN8 33462493
    49 6xhv:1E (2.4) BS04 MG ? GO:0003735 ... Q5SHN8 33462493
    50 6xhv:1E (2.4) BS05 MG ? GO:0003735 ... Q5SHN8 33462493
    51 6xhv:1E (2.4) BS06 MG ? GO:0003735 ... Q5SHN8 33462493
    52 6xhv:1E (2.4) BS07 MG ? GO:0003735 ... Q5SHN8 33462493
    53 6xhv:1F (2.4) BS01 rna ? GO:0003735 ... Q5SHN9 33462493
    54 6xhv:1F (2.4) BS02 MG ? GO:0003735 ... Q5SHN9 33462493
    55 6xhv:1F (2.4) BS03 MG ? GO:0003735 ... Q5SHN9 33462493
    56 6xhv:1F (2.4) BS04 MG ? GO:0003735 ... Q5SHN9 33462493
    57 6xhv:1F (2.4) BS05 MG ? GO:0003735 ... Q5SHN9 33462493
    58 6xhv:1F (2.4) BS06 MG ? GO:0003735 ... Q5SHN9 33462493
    59 6xhv:1F (2.4) BS07 MG ? GO:0003735 ... Q5SHN9 33462493
    60 6xhv:1F (2.4) BS08 MG ? GO:0003735 ... Q5SHN9 33462493
    61 6xhv:1F (2.4) BS09 MG ? GO:0003735 ... Q5SHN9 33462493
    62 6xhv:1F (2.4) BS10 MG ? GO:0003735 ... Q5SHN9 33462493
    63 6xhv:1F (2.4) BS11 MG ? GO:0003735 ... Q5SHN9 33462493
    64 6xhv:1F (2.4) BS12 MG ? GO:0003735 ... Q5SHN9 33462493
    65 6xhv:1G (2.4) BS01 rna ? GO:0000049 ... Q5SHQ0 33462493
    66 6xhv:1G (2.4) BS02 rna ? GO:0000049 ... Q5SHQ0 33462493
    67 6xhv:1G (2.4) BS03 rna ? GO:0000049 ... Q5SHQ0 33462493
    68 6xhv:1G (2.4) BS04 MG ? GO:0000049 ... Q5SHQ0 33462493
    69 6xhv:1G (2.4) BS05 MG ? GO:0000049 ... Q5SHQ0 33462493
    70 6xhv:1H (2.4) BS01 rna ? GO:0002181 ... P0DOY8 33462493
    71 6xhv:1I (2.4) BS01 rna ? GO:0003735 ... Q5SLQ1 33462493
    72 6xhv:1I (2.4) BS02 MG ? GO:0003735 ... Q5SLQ1 33462493
    73 6xhv:1N (2.4) BS01 rna ? GO:0003729 ... P60488 33462493
    74 6xhv:1N (2.4) BS02 MG ? GO:0003729 ... P60488 33462493
    75 6xhv:1N (2.4) BS03 MG ? GO:0003729 ... P60488 33462493
    76 6xhv:1N (2.4) BS04 MG ? GO:0003729 ... P60488 33462493
    77 6xhv:1O (2.4) BS01 rna ? GO:0003735 ... Q5SHP8 33462493
    78 6xhv:1O (2.4) BS02 rna ? GO:0003735 ... Q5SHP8 33462493
    79 6xhv:1O (2.4) BS03 MG ? GO:0003735 ... Q5SHP8 33462493
    80 6xhv:1O (2.4) BS04 MG ? GO:0003735 ... Q5SHP8 33462493
    81 6xhv:1P (2.4) BS01 rna ? GO:0003735 ... Q5SHQ7 33462493
    82 6xhv:1P (2.4) BS02 MG ? GO:0003735 ... Q5SHQ7 33462493
    83 6xhv:1P (2.4) BS03 MG ? GO:0003735 ... Q5SHQ7 33462493
    84 6xhv:1P (2.4) BS04 MG ? GO:0003735 ... Q5SHQ7 33462493
    85 6xhv:1P (2.4) BS05 MG ? GO:0003735 ... Q5SHQ7 33462493
    86 6xhv:1Q (2.4) BS01 rna ? GO:0000049 ... P60489 33462493
    87 6xhv:1Q (2.4) BS02 rna ? GO:0000049 ... P60489 33462493
    88 6xhv:1Q (2.4) BS03 rna ? GO:0000049 ... P60489 33462493
    89 6xhv:1Q (2.4) BS04 MG ? GO:0000049 ... P60489 33462493
    90 6xhv:1Q (2.4) BS05 MG ? GO:0000049 ... P60489 33462493
    91 6xhv:1Q (2.4) BS06 MG ? GO:0000049 ... P60489 33462493
    92 6xhv:1Q (2.4) BS07 MG ? GO:0000049 ... P60489 33462493
    93 6xhv:1Q (2.4) BS08 MG ? GO:0000049 ... P60489 33462493
    94 6xhv:1R (2.4) BS01 rna ? GO:0003735 ... Q9Z9H5 33462493
    95 6xhv:1R (2.4) BS02 MG ? GO:0003735 ... Q9Z9H5 33462493
    96 6xhv:1R (2.4) BS03 MG ? GO:0003735 ... Q9Z9H5 33462493
    97 6xhv:1R (2.4) BS04 MG ? GO:0003735 ... Q9Z9H5 33462493
    98 6xhv:1S (2.4) BS01 rna ? GO:0003735 ... Q5SHQ4 33462493
    99 6xhv:1S (2.4) BS02 rna ? GO:0003735 ... Q5SHQ4 33462493
    100 6xhv:1S (2.4) BS03 MG ? GO:0003735 ... Q5SHQ4 33462493
    101 6xhv:1S (2.4) BS04 MG ? GO:0003735 ... Q5SHQ4 33462493
    102 6xhv:1T (2.4) BS01 rna ? GO:0003735 ... P60490 33462493
    103 6xhv:1T (2.4) BS02 rna ? GO:0003735 ... P60490 33462493
    104 6xhv:1T (2.4) BS03 MG ? GO:0003735 ... P60490 33462493
    105 6xhv:1U (2.4) BS01 rna ? GO:0000027 ... P60491 33462493
    106 6xhv:1U (2.4) BS02 MG ? GO:0000027 ... P60491 33462493
    107 6xhv:1U (2.4) BS03 MG ? GO:0000027 ... P60491 33462493
    108 6xhv:1U (2.4) BS04 MG ? GO:0000027 ... P60491 33462493
    109 6xhv:1U (2.4) BS05 MG ? GO:0000027 ... P60491 33462493
    110 6xhv:1U (2.4) BS06 MG ? GO:0000027 ... P60491 33462493
    111 6xhv:1U (2.4) BS07 MG ? GO:0000027 ... P60491 33462493
    112 6xhv:1U (2.4) BS08 MG ? GO:0000027 ... P60491 33462493
    113 6xhv:1U (2.4) BS09 MG ? GO:0000027 ... P60491 33462493
    114 6xhv:1U (2.4) BS10 MG ? GO:0000027 ... P60491 33462493
    115 6xhv:1V (2.4) BS01 rna ? GO:0003723 ... P60492 33462493
    116 6xhv:1V (2.4) BS02 MG ? GO:0003723 ... P60492 33462493
    117 6xhv:1V (2.4) BS03 MG ? GO:0003723 ... P60492 33462493
    118 6xhv:1V (2.4) BS04 MG ? GO:0003723 ... P60492 33462493
    119 6xhv:1V (2.4) BS05 MG ? GO:0003723 ... P60492 33462493
    120 6xhv:1V (2.4) BS06 MG ? GO:0003723 ... P60492 33462493
    121 6xhv:1V (2.4) BS07 MG ? GO:0003723 ... P60492 33462493
    122 6xhv:1W (2.4) BS01 rna ? GO:0003735 ... Q5SHP3 33462493
    123 6xhv:1W (2.4) BS02 MG ? GO:0003735 ... Q5SHP3 33462493
    124 6xhv:1W (2.4) BS03 MG ? GO:0003735 ... Q5SHP3 33462493
    125 6xhv:1W (2.4) BS04 MG ? GO:0003735 ... Q5SHP3 33462493
    126 6xhv:1W (2.4) BS05 MG ? GO:0003735 ... Q5SHP3 33462493
    127 6xhv:1W (2.4) BS06 MG ? GO:0003735 ... Q5SHP3 33462493
    128 6xhv:1X (2.4) BS01 rna ? GO:0000027 ... Q5SHP0 33462493
    129 6xhv:1X (2.4) BS02 MG ? GO:0000027 ... Q5SHP0 33462493
    130 6xhv:1X (2.4) BS03 MG ? GO:0000027 ... Q5SHP0 33462493
    131 6xhv:1X (2.4) BS04 MG ? GO:0000027 ... Q5SHP0 33462493
    132 6xhv:1X (2.4) BS05 MG ? GO:0000027 ... Q5SHP0 33462493
    133 6xhv:1X (2.4) BS06 MG ? GO:0000027 ... Q5SHP0 33462493
    134 6xhv:1Y (2.4) BS01 rna ? GO:0003723 ... Q5SHP9 33462493
    135 6xhv:1Y (2.4) BS02 MG ? GO:0003723 ... Q5SHP9 33462493
    136 6xhv:1Y (2.4) BS03 ZN ? GO:0003723 ... Q5SHP9 33462493
    137 6xhv:1Z (2.4) BS01 rna ? GO:0003723 ... Q5SHZ1 33462493
    138 6xhv:1Z (2.4) BS02 rna ? GO:0003723 ... Q5SHZ1 33462493
    139 6xhv:1Z (2.4) BS03 MG ? GO:0003723 ... Q5SHZ1 33462493
    140 6xhv:1b (2.4) BS01 rna ? GO:0003735 ... P80371 33462493
    141 6xhv:1b (2.4) BS02 MG ? GO:0003735 ... P80371 33462493
    142 6xhv:1c (2.4) BS01 rna ? GO:0003676 ... P80372 33462493
    143 6xhv:1d (2.4) BS01 rna ? GO:0003723 ... P80373 33462493
    144 6xhv:1d (2.4) BS02 SF4 ? GO:0003723 ... P80373 33462493
    145 6xhv:1e (2.4) BS01 rna ? GO:0003723 ... Q5SHQ5 33462493
    146 6xhv:1e (2.4) BS02 MG ? GO:0003723 ... Q5SHQ5 33462493
    147 6xhv:1e (2.4) BS03 MG ? GO:0003723 ... Q5SHQ5 33462493
    148 6xhv:1f (2.4) BS01 rna ? GO:0003735 ... Q5SLP8 33462493
    149 6xhv:1f (2.4) BS02 MG ? GO:0003735 ... Q5SLP8 33462493
    150 6xhv:1g (2.4) BS01 rna ? GO:0000028 ... P17291 33462493
    151 6xhv:1g (2.4) BS02 rna ? GO:0000028 ... P17291 33462493
    152 6xhv:1h (2.4) BS01 rna ? GO:0003735 ... P0DOY9 33462493
    153 6xhv:1i (2.4) BS01 rna ? GO:0000049 ... P80374 33462493
    154 6xhv:1i (2.4) BS02 rna ? GO:0000049 ... P80374 33462493
    155 6xhv:1j (2.4) BS01 rna ? GO:0000049 ... Q5SHN7 33462493
    156 6xhv:1k (2.4) BS01 rna ? GO:0003735 ... P80376 33462493
    157 6xhv:1k (2.4) BS02 MG ? GO:0003735 ... P80376 33462493
    158 6xhv:1l (2.4) BS01 rna ? GO:0000049 ... Q5SHN3 33462493
    159 6xhv:1l (2.4) BS02 rna ? GO:0000049 ... Q5SHN3 33462493
    160 6xhv:1l (2.4) BS03 MG ? GO:0000049 ... Q5SHN3 33462493
    161 6xhv:1m (2.4) BS01 rna ? GO:0000049 ... P80377 33462493
    162 6xhv:1m (2.4) BS02 rna ? GO:0000049 ... P80377 33462493
    163 6xhv:1m (2.4) BS03 rna ? GO:0000049 ... P80377 33462493
    164 6xhv:1m (2.4) BS04 MG ? GO:0000049 ... P80377 33462493
    165 6xhv:1n (2.4) BS01 rna ? GO:0003735 ... P0DOY6 33462493
    166 6xhv:1n (2.4) BS02 ZN ? GO:0003735 ... P0DOY6 33462493
    167 6xhv:1o (2.4) BS01 rna ? GO:0003735 ... Q5SJ76 33462493
    168 6xhv:1o (2.4) BS02 rna ? GO:0003735 ... Q5SJ76 33462493
    169 6xhv:1p (2.4) BS01 rna ? GO:0003735 ... Q5SJH3 33462493
    170 6xhv:1q (2.4) BS01 rna ? GO:0003735 ... P0DOY7 33462493
    171 6xhv:1r (2.4) BS01 rna ? GO:0003735 ... Q5SLQ0 33462493
    172 6xhv:1s (2.4) BS01 rna ? GO:0000028 ... Q5SHP2 33462493
    173 6xhv:1t (2.4) BS01 rna ? GO:0003723 ... P80380 33462493
    174 6xhv:1t (2.4) BS02 MG ? GO:0003723 ... P80380 33462493
    175 6xhv:20 (2.4) BS01 rna ? GO:0003735 ... P60493 33462493
    176 6xhv:20 (2.4) BS02 rna ? GO:0003735 ... P60493 33462493
    177 6xhv:20 (2.4) BS03 rna ? GO:0003735 ... P60493 33462493
    178 6xhv:21 (2.4) BS01 rna ? GO:0003735 ... P60494 33462493
    179 6xhv:21 (2.4) BS02 rna ? GO:0003735 ... P60494 33462493
    180 6xhv:21 (2.4) BS03 MG ? GO:0003735 ... P60494 33462493
    181 6xhv:22 (2.4) BS01 rna ? GO:0003735 ... Q5SHP6 33462493
    182 6xhv:23 (2.4) BS01 rna ? GO:0003735 ... Q5SHQ6 33462493
    183 6xhv:23 (2.4) BS02 rna ? GO:0003735 ... Q5SHQ6 33462493
    184 6xhv:23 (2.4) BS03 MG ? GO:0003735 ... Q5SHQ6 33462493
    185 6xhv:24 (2.4) BS01 rna ? GO:0003735 ... Q5SJE1 33462493
    186 6xhv:24 (2.4) BS02 ZN ? GO:0003735 ... Q5SJE1 33462493
    187 6xhv:25 (2.4) BS01 rna ? GO:0003735 ... P80339 33462493
    188 6xhv:25 (2.4) BS02 ZN ? GO:0003735 ... P80339 33462493
    189 6xhv:26 (2.4) BS01 rna ? GO:0000049 ... P35871 33462493
    190 6xhv:26 (2.4) BS02 ZN ? GO:0000049 ... P35871 33462493
    191 6xhv:27 (2.4) BS01 rna ? GO:0003735 ... P80340 33462493
    192 6xhv:27 (2.4) BS02 MG ? GO:0003735 ... P80340 33462493
    193 6xhv:28 (2.4) BS01 rna ? GO:0003735 ... Q5SKU1 33462493
    194 6xhv:29 (2.4) BS01 rna ? GO:0003735 ... Q5SHR2 33462493
    195 6xhv:29 (2.4) BS02 ZN ? GO:0003735 ... Q5SHR2 33462493
    196 6xhv:2D (2.4) BS01 rna ? GO:0002181 ... P60405 33462493
    197 6xhv:2D (2.4) BS02 rna ? GO:0002181 ... P60405 33462493
    198 6xhv:2D (2.4) BS03 MG ? GO:0002181 ... P60405 33462493
    199 6xhv:2D (2.4) BS04 MG ? GO:0002181 ... P60405 33462493
    200 6xhv:2D (2.4) BS05 MG ? GO:0002181 ... P60405 33462493
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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