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BioLiP
Download all results in tab-seperated text for 38 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6x0n:A (10.0) BS01 dna ? GO:0000786 ... P84233 32939087
    2 6x0n:A (10.0) BS02 dna ? GO:0000786 ... P84233 32939087
    3 6x0n:B (10.0) BS01 dna ? GO:0000786 ... P62799 32939087
    4 6x0n:B (10.0) BS02 dna ? GO:0000786 ... P62799 32939087
    5 6x0n:C (10.0) BS01 dna ? GO:0000786 ... P06897 32939087
    6 6x0n:C (10.0) BS02 dna ? GO:0000786 ... P06897 32939087
    7 6x0n:D (10.0) BS01 dna ? GO:0000786 ... P02281 32939087
    8 6x0n:D (10.0) BS02 dna ? GO:0000786 ... P02281 32939087
    9 6x0n:E (10.0) BS01 dna ? GO:0000786 ... P84233 32939087
    10 6x0n:E (10.0) BS02 dna ? GO:0000786 ... P84233 32939087
    11 6x0n:F (10.0) BS01 dna ? GO:0000786 ... P62799 32939087
    12 6x0n:G (10.0) BS01 dna ? GO:0000786 ... P06897 32939087
    13 6x0n:G (10.0) BS02 dna ? GO:0000786 ... P06897 32939087
    14 6x0n:H (10.0) BS01 dna ? GO:0000786 ... P02281 32939087
    15 6x0n:H (10.0) BS02 dna ? GO:0000786 ... P02281 32939087
    16 6x0n:P (10.0) BS01 dna 2.4.2.-
    2.4.2.30    		 GO:0003677 ... Q9UGN5 32939087
    17 6x0n:P (10.0) BS02 dna 2.4.2.-
    2.4.2.30    		 GO:0003677 ... Q9UGN5 32939087
    18 6x0n:P (10.0) BS03 dna 2.4.2.-
    2.4.2.30    		 GO:0003677 ... Q9UGN5 32939087
    19 6x0n:R (10.0) BS01 dna 2.4.2.-
    2.4.2.30    		 GO:0003677 ... Q9UGN5 32939087
    20 6x0n:R (10.0) BS02 dna 2.4.2.-
    2.4.2.30    		 GO:0003677 ... Q9UGN5 32939087
    21 6x0n:R (10.0) BS03 dna 2.4.2.-
    2.4.2.30    		 GO:0003677 ... Q9UGN5 32939087
    22 6x0n:R (10.0) BS04 dna 2.4.2.-
    2.4.2.30    		 GO:0003677 ... Q9UGN5 32939087
    23 6x0n:a (10.0) BS01 dna ? GO:0000786 ... P84233 32939087
    24 6x0n:a (10.0) BS02 dna ? GO:0000786 ... P84233 32939087
    25 6x0n:b (10.0) BS01 dna ? GO:0000786 ... P62799 32939087
    26 6x0n:b (10.0) BS02 dna ? GO:0000786 ... P62799 32939087
    27 6x0n:c (10.0) BS01 dna ? GO:0000786 ... P06897 32939087
    28 6x0n:c (10.0) BS02 dna ? GO:0000786 ... P06897 32939087
    29 6x0n:d (10.0) BS01 dna ? GO:0000786 ... P02281 32939087
    30 6x0n:d (10.0) BS02 dna ? GO:0000786 ... P02281 32939087
    31 6x0n:e (10.0) BS01 dna ? GO:0000786 ... P84233 32939087
    32 6x0n:e (10.0) BS02 dna ? GO:0000786 ... P84233 32939087
    33 6x0n:f (10.0) BS01 dna ? GO:0000786 ... P62799 32939087
    34 6x0n:f (10.0) BS02 dna ? GO:0000786 ... P62799 32939087
    35 6x0n:g (10.0) BS01 dna ? GO:0000786 ... P06897 32939087
    36 6x0n:g (10.0) BS02 dna ? GO:0000786 ... P06897 32939087
    37 6x0n:h (10.0) BS01 dna ? GO:0000786 ... P02281 32939087
    38 6x0n:h (10.0) BS02 dna ? GO:0000786 ... P02281 32939087
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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