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BioLiP
Download all results in tab-seperated text for 71 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6vzj:0 (4.1) BS01 rna ? GO:0002181 ... P0AG48 32820061
    2 6vzj:1 (4.1) BS01 rna ? GO:0002181 ... P61175 32820061
    3 6vzj:2 (4.1) BS01 rna ? GO:0000027 ... P0ADZ0 32820061
    4 6vzj:3 (4.1) BS01 rna ? GO:0000027 ... P60624 32820061
    5 6vzj:4 (4.1) BS01 rna ? GO:0000027 ... P68919 32820061
    6 6vzj:9 (4.1) BS01 rna ? GO:0002181 ... P0A7J3 32820061
    7 6vzj:AA (4.1) BS01 dna 2.7.7.6 GO:0000345 ... P0A8V2 32820061
    8 6vzj:AA (4.1) BS02 dna 2.7.7.6 GO:0000345 ... P0A8V2 32820061
    9 6vzj:AA (4.1) BS03 rna 2.7.7.6 GO:0000345 ... P0A8V2 32820061
    10 6vzj:AA (4.1) BS04 rna 2.7.7.6 GO:0000345 ... P0A8V2 32820061
    11 6vzj:AE (4.1) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    12 6vzj:AE (4.1) BS02 dna 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    13 6vzj:AE (4.1) BS03 rna 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    14 6vzj:AE (4.1) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    15 6vzj:AE (4.1) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    16 6vzj:AE (4.1) BS06 ZN 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    17 6vzj:C (4.1) BS01 rna ? GO:0002181 ... P0A7T7 32820061
    18 6vzj:E (4.1) BS01 rna ? GO:0000028 ... P0A7U7 32820061
    19 6vzj:F (4.1) BS01 rna ? GO:0000028 ... P68679 32820061
    20 6vzj:G (4.1) BS01 rna ? GO:0000028 ... P0A7V0 32820061
    21 6vzj:I (4.1) BS01 rna ? GO:0000028 ... P0A7V3 32820061
    22 6vzj:I (4.1) BS02 rna ? GO:0000028 ... P0A7V3 32820061
    23 6vzj:J (4.1) BS01 rna ? GO:0000028 ... P0A7V8 32820061
    24 6vzj:K (4.1) BS01 rna ? GO:0000028 ... P0A7W1 32820061
    25 6vzj:K (4.1) BS02 rna ? GO:0000028 ... P0A7W1 32820061
    26 6vzj:L (4.1) BS01 rna ? GO:0002181 ... P02358 32820061
    27 6vzj:M (4.1) BS01 rna ? GO:0003723 ... P02359 32820061
    28 6vzj:M (4.1) BS02 rna ? GO:0003723 ... P02359 32820061
    29 6vzj:N (4.1) BS01 rna ? GO:0000028 ... P0A7W7 32820061
    30 6vzj:O (4.1) BS01 rna ? GO:0000049 ... P0A7X3 32820061
    31 6vzj:P (4.1) BS01 rna ? GO:0000049 ... P0A7R5 32820061
    32 6vzj:Q (4.1) BS01 rna ? GO:0002181 ... P0A7R9 32820061
    33 6vzj:R (4.1) BS01 rna ? GO:0000049 ... P0A7S3 32820061
    34 6vzj:S (4.1) BS01 rna ? GO:0000028 ... P0AG59 32820061
    35 6vzj:T (4.1) BS01 rna ? GO:0000028 ... P0ADZ4 32820061
    36 6vzj:T (4.1) BS02 rna ? GO:0000028 ... P0ADZ4 32820061
    37 6vzj:U (4.1) BS01 rna ? GO:0000028 ... P0A7T3 32820061
    38 6vzj:V (4.1) BS01 rna ? GO:0000028 ... P0AG63 32820061
    39 6vzj:W (4.1) BS01 rna ? GO:0000028 ... P0A7U3 32820061
    40 6vzj:X (4.1) BS01 rna ? GO:0000049 ... P0A7S9 32820061
    41 6vzj:X (4.1) BS02 rna ? GO:0000049 ... P0A7S9 32820061
    42 6vzj:b (4.1) BS01 rna ? GO:0003735 ... P0A7L8 32820061
    43 6vzj:b (4.1) BS02 rna ? GO:0003735 ... P0A7L8 32820061
    44 6vzj:c (4.1) BS01 rna ? GO:0000027 ... P0A7M2 32820061
    45 6vzj:e (4.1) BS01 rna ? GO:0000027 ... P0A7M6 32820061
    46 6vzj:f (4.1) BS01 rna ? GO:0000027 ... P0AG51 32820061
    47 6vzj:f (4.1) BS02 rna ? GO:0000027 ... P0AG51 32820061
    48 6vzj:g (4.1) BS01 rna ? GO:0002181 ... P0A7M9 32820061
    49 6vzj:h (4.1) BS01 rna ? GO:0000027 ... P60422 32820061
    50 6vzj:i (4.1) BS01 rna ? GO:0000027 ... P0A7N4 32820061
    51 6vzj:j (4.1) BS01 rna ? GO:0000027 ... P60438 32820061
    52 6vzj:k (4.1) BS01 rna ? GO:0000027 ... P0A7N9 32820061
    53 6vzj:l (4.1) BS01 rna ? GO:0001070 ... P60723 32820061
    54 6vzj:m (4.1) BS01 rna ? GO:0002181 ... P0A7P5 32820061
    55 6vzj:n (4.1) BS01 rna ? GO:0000027 ... P62399 32820061
    56 6vzj:n (4.1) BS02 rna ? GO:0000027 ... P62399 32820061
    57 6vzj:o (4.1) BS01 rna ? GO:0002181 ... P0A7Q1 32820061
    58 6vzj:p (4.1) BS01 rna ? GO:0000027 ... P0AG55 32820061
    59 6vzj:q (4.1) BS01 rna ? GO:0002181 ... P0A7Q6 32820061
    60 6vzj:r (4.1) BS01 rna ? GO:0002181 ... P0A7R1 32820061
    61 6vzj:s (4.1) BS01 rna ? GO:0002181 ... P0AA10 32820061
    62 6vzj:t (4.1) BS01 rna ? GO:0002181 ... P0ADY3 32820061
    63 6vzj:t (4.1) BS02 rna ? GO:0002181 ... P0ADY3 32820061
    64 6vzj:u (4.1) BS01 rna ? GO:0002181 ... P02413 32820061
    65 6vzj:v (4.1) BS01 rna ? GO:0000027 ... P0ADY7 32820061
    66 6vzj:v (4.1) BS02 rna ? GO:0000027 ... P0ADY7 32820061
    67 6vzj:w (4.1) BS01 rna ? GO:0000027 ... P0AG44 32820061
    68 6vzj:x (4.1) BS01 rna ? GO:0002181 ... P0C018 32820061
    69 6vzj:x (4.1) BS02 rna ? GO:0002181 ... P0C018 32820061
    70 6vzj:y (4.1) BS01 rna ? GO:0000027 ... P0A7K6 32820061
    71 6vzj:z (4.1) BS01 rna ? GO:0000027 ... P0A7L3 32820061
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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