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BioLiP
Download all results in tab-seperated text for 100 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6uz7:1 (3.6) BS01 rna ? GO:0003743 ... Q6CIX3 31900355
    2 6uz7:1 (3.6) BS02 rna ? GO:0003743 ... Q6CIX3 31900355
    3 6uz7:A (3.6) BS01 rna ? GO:0000028 ... Q6CN12 31900355
    4 6uz7:AA (3.6) BS01 rna ? GO:0002181 ... Q6CQM3 31900355
    5 6uz7:AB (3.6) BS01 rna ? GO:0003723 ... Q6CJR7 31900355
    6 6uz7:AC (3.6) BS01 rna ? GO:0003723 ... Q6CW41 31900355
    7 6uz7:AC (3.6) BS02 rna ? GO:0003723 ... Q6CW41 31900355
    8 6uz7:AD (3.6) BS01 rna ? GO:0000027 ... Q6CRR9 31900355
    9 6uz7:AD (3.6) BS02 rna ? GO:0000027 ... Q6CRR9 31900355
    10 6uz7:AE (3.6) BS01 rna ? GO:0000027 ... Q6CWE7 31900355
    11 6uz7:AF (3.6) BS01 rna ? GO:0000463 ... Q6CS71 31900355
    12 6uz7:AF (3.6) BS02 rna ? GO:0000463 ... Q6CS71 31900355
    13 6uz7:AG (3.6) BS01 rna ? GO:0000470 ... B4UN96 31900355
    14 6uz7:AG (3.6) BS02 rna ? GO:0000470 ... B4UN96 31900355
    15 6uz7:AH (3.6) BS01 rna ? GO:0002181 ... Q6CLA6 31900355
    16 6uz7:AI (3.6) BS01 rna ? GO:0000027 ... Q6CRX7 31900355
    17 6uz7:AI (3.6) BS02 rna ? GO:0000027 ... Q6CRX7 31900355
    18 6uz7:AJ (3.6) BS01 rna ? GO:0003723 ... Q6CKT4 31900355
    19 6uz7:AJ (3.6) BS02 rna ? GO:0003723 ... Q6CKT4 31900355
    20 6uz7:AK (3.6) BS01 rna N/A N/A N/A 31900355
    21 6uz7:AL (3.6) BS01 rna ? GO:0003723 ... Q875M0 31900355
    22 6uz7:AM (3.6) BS01 rna ? GO:0003723 ... Q6CVB1 31900355
    23 6uz7:AN (3.6) BS01 rna ? GO:0002181 ... Q6CJL7 31900355
    24 6uz7:AN (3.6) BS02 rna ? GO:0002181 ... Q6CJL7 31900355
    25 6uz7:AO (3.6) BS01 rna ? GO:0003729 ... Q6CL98 31900355
    26 6uz7:AP (3.6) BS01 rna ? GO:0002181 ... Q6CXQ6 31900355
    27 6uz7:AP (3.6) BS02 rna ? GO:0002181 ... Q6CXQ6 31900355
    28 6uz7:AQ (3.6) BS01 rna ? GO:0003723 ... Q6CXL8 31900355
    29 6uz7:AR (3.6) BS01 rna ? GO:0003723 ... Q6CNH9 31900355
    30 6uz7:AR (3.6) BS02 rna ? GO:0003723 ... Q6CNH9 31900355
    31 6uz7:AS (3.6) BS01 rna N/A GO:0003735 ... N/A 31900355
    32 6uz7:AS (3.6) BS02 rna N/A GO:0003735 ... N/A 31900355
    33 6uz7:AT (3.6) BS01 rna ? GO:0003735 ... Q6CM20 31900355
    34 6uz7:AT (3.6) BS02 rna ? GO:0003735 ... Q6CM20 31900355
    35 6uz7:AU (3.6) BS01 rna ? GO:0002181 ... Q6CRZ8 31900355
    36 6uz7:AV (3.6) BS01 rna ? GO:0003735 ... Q6CP75 31900355
    37 6uz7:AW (3.6) BS01 rna ? GO:0002181 ... P38665 31900355
    38 6uz7:AX (3.6) BS01 rna ? GO:0000027 ... P48045 31900355
    39 6uz7:AX (3.6) BS02 rna ? GO:0000027 ... P48045 31900355
    40 6uz7:AY (3.6) BS01 rna ? GO:0002181 ... Q6CW97 31900355
    41 6uz7:AY (3.6) BS02 rna ? GO:0002181 ... Q6CW97 31900355
    42 6uz7:AZ (3.6) BS01 rna ? GO:0003735 ... Q6CPN9 31900355
    43 6uz7:B (3.6) BS01 rna ? GO:0003735 ... Q6CWD0 31900355
    44 6uz7:B (3.6) BS02 rna ? GO:0003735 ... Q6CWD0 31900355
    45 6uz7:Ba (3.6) BS01 rna ? GO:0003735 ... Q8J287 31900355
    46 6uz7:Bb (3.6) BS01 rna ? GO:0002181 ... Q6CQM1 31900355
    47 6uz7:Bc (3.6) BS01 rna ? GO:0003723 ... P38664 31900355
    48 6uz7:Bd (3.6) BS01 rna ? GO:0002181 ... Q6CWM6 31900355
    49 6uz7:Be (3.6) BS01 rna ? GO:0003735 ... Q6CP82 31900355
    50 6uz7:Bf (3.6) BS01 rna ? GO:0002181 ... Q6CRP7 31900355
    51 6uz7:Bg (3.6) BS01 rna ? GO:0003735 ... Q6CU17 31900355
    52 6uz7:Bh (3.6) BS01 rna ? GO:0000463 ... Q6CL71 31900355
    53 6uz7:Bh (3.6) BS02 rna ? GO:0000463 ... Q6CL71 31900355
    54 6uz7:Bi (3.6) BS01 rna ? GO:0002181 ... Q6CR18 31900355
    55 6uz7:Bj (3.6) BS01 rna ? GO:0003723 ... Q6CUW0 31900355
    56 6uz7:Bj (3.6) BS02 rna ? GO:0003723 ... Q6CUW0 31900355
    57 6uz7:Bj (3.6) BS03 ZN ? GO:0003723 ... Q6CUW0 31900355
    58 6uz7:Bk (3.6) BS01 rna ? GO:0003735 ... Q6CSS8 31900355
    59 6uz7:Bl (3.6) BS01 rna N/A GO:0003735 ... N/A 31900355
    60 6uz7:Bl (3.6) BS02 rna N/A GO:0003735 ... N/A 31900355
    61 6uz7:Bm (3.6) BS01 rna ? GO:0003735 ... Q9Y854 31900355
    62 6uz7:Bm (3.6) BS02 ZN ? GO:0003735 ... Q9Y854 31900355
    63 6uz7:Bo (3.6) BS01 rna ? GO:0003735 ... P31027 31900355
    64 6uz7:Bo (3.6) BS02 rna ? GO:0003735 ... P31027 31900355
    65 6uz7:Bp (3.6) BS01 rna ? GO:0003735 ... Q6CPC5 31900355
    66 6uz7:Bq (3.6) BS01 rna ? GO:0000470 ... Q6CWR9 31900355
    67 6uz7:Br (3.6) BS01 rna ? GO:0000027 ... Q6CW89 31900355
    68 6uz7:C (3.6) BS01 rna ? GO:0003723 ... Q6CKL3 31900355
    69 6uz7:D (3.6) BS01 rna ? GO:0003723 ... Q6CRK7 31900355
    70 6uz7:E (3.6) BS01 rna ? GO:0003723 ... Q6CWJ2 31900355
    71 6uz7:F (3.6) BS01 rna ? GO:0000028 ... Q6CRA3 31900355
    72 6uz7:G (3.6) BS01 rna ? GO:0003735 ... Q6CM04 31900355
    73 6uz7:H (3.6) BS01 rna ? GO:0003735 ... Q6CTD6 31900355
    74 6uz7:I (3.6) BS01 rna ? GO:0000462 ... Q6CMG3 31900355
    75 6uz7:I (3.6) BS02 rna ? GO:0000462 ... Q6CMG3 31900355
    76 6uz7:J (3.6) BS01 rna ? GO:0003723 ... Q6CM18 31900355
    77 6uz7:K (3.6) BS01 rna ? GO:0003723 ... Q6CVZ5 31900355
    78 6uz7:L (3.6) BS01 rna ? GO:0003735 ... Q6CX80 31900355
    79 6uz7:M (3.6) BS01 rna ? GO:0003735 ... Q6CLU4 31900355
    80 6uz7:N (3.6) BS01 rna ? GO:0003735 ... Q6CJK0 31900355
    81 6uz7:O (3.6) BS01 rna ? GO:0000028 ... P27069 31900355
    82 6uz7:P (3.6) BS01 rna ? GO:0000028 ... Q6CKV4 31900355
    83 6uz7:Q (3.6) BS01 rna ? GO:0000462 ... Q875N2 31900355
    84 6uz7:R (3.6) BS01 rna ? GO:0003735 ... Q6CWU3 31900355
    85 6uz7:S (3.6) BS01 rna ? GO:0003676 ... Q6CWT9 31900355
    86 6uz7:T (3.6) BS01 rna ? GO:0000028 ... Q6CXM0 31900355
    87 6uz7:U (3.6) BS01 rna ? GO:0003735 ... Q6CIM1 31900355
    88 6uz7:W (3.6) BS01 rna ? GO:0003735 ... Q6CW21 31900355
    89 6uz7:X (3.6) BS01 rna ? GO:0003735 ... Q875M3 31900355
    90 6uz7:Y (3.6) BS01 rna ? GO:0003735 ... Q6CU44 31900355
    91 6uz7:Z (3.6) BS01 rna ? GO:0003735 ... Q6CW78 31900355
    92 6uz7:a (3.6) BS01 rna ? GO:0003729 ... Q6CS01 31900355
    93 6uz7:a (3.6) BS02 ZN ? GO:0003729 ... Q6CS01 31900355
    94 6uz7:b (3.6) BS01 rna ? GO:0000028 ... Q6CNL2 31900355
    95 6uz7:b (3.6) BS02 ZN ? GO:0000028 ... Q6CNL2 31900355
    96 6uz7:c (3.6) BS01 rna ? GO:0000028 ... P33285 31900355
    97 6uz7:d (3.6) BS01 rna ? GO:0003735 ... Q6CPG3 31900355
    98 6uz7:e (3.6) BS01 rna ? GO:0003735 ... Q6CUH5 31900355
    99 6uz7:f (3.6) BS01 rna ? GO:0003735 ... P69061 31900355
    100 6uz7:g (3.6) BS01 rna ? GO:0001934 ... Q6CNI7 31900355
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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