Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 36 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6u48:C0 (2.87) BS01 rna ? GO:0000027 ... P0AG51 31594941
    2 6u48:C0 (2.87) BS02 rna ? GO:0000027 ... P0AG51 31594941
    3 6u48:C1 (2.87) BS01 rna ? GO:0000027 ... P0A7N4 31594941
    4 6u48:C2 (2.87) BS01 rna ? GO:0000027 ... P0A7N9 31594941
    5 6u48:C3 (2.87) BS01 rna ? GO:0002181 ... P0A7P5 31594941
    6 6u48:C4 (2.87) BS01 rna ? GO:0002181 ... P0A7Q1 31594941
    7 6u48:C5 (2.87) BS01 rna ? GO:0002181 ... P0A7Q6 31594941
    8 6u48:CC (2.87) BS01 rna ? GO:0000027 ... P60422 31594941
    9 6u48:CD (2.87) BS01 rna ? GO:0000027 ... P60438 31594941
    10 6u48:CE (2.87) BS01 rna ? GO:0001070 ... P60723 31594941
    11 6u48:CE (2.87) BS02 peptide ? GO:0001070 ... P60723 31594941
    12 6u48:CF (2.87) BS01 rna ? GO:0000027 ... P62399 31594941
    13 6u48:CF (2.87) BS02 rna ? GO:0000027 ... P62399 31594941
    14 6u48:CG (2.87) BS01 rna ? GO:0000027 ... P0AG55 31594941
    15 6u48:CH (2.87) BS01 rna ? GO:0002181 ... P0A7R1 31594941
    16 6u48:CJ (2.87) BS01 rna ? GO:0000027 ... P0A7J7 31594941
    17 6u48:CK (2.87) BS01 rna ? GO:0002181 ... P0AA10 31594941
    18 6u48:CL (2.87) BS01 rna ? GO:0002181 ... P0ADY3 31594941
    19 6u48:CM (2.87) BS01 rna ? GO:0002181 ... P02413 31594941
    20 6u48:CN (2.87) BS01 rna ? GO:0000027 ... P0ADY7 31594941
    21 6u48:CN (2.87) BS02 rna ? GO:0000027 ... P0ADY7 31594941
    22 6u48:CO (2.87) BS01 rna ? GO:0000027 ... P0AG44 31594941
    23 6u48:CP (2.87) BS01 rna ? GO:0002181 ... P0C018 31594941
    24 6u48:CP (2.87) BS02 rna ? GO:0002181 ... P0C018 31594941
    25 6u48:CQ (2.87) BS01 rna ? GO:0000027 ... P0A7K6 31594941
    26 6u48:CR (2.87) BS01 rna ? GO:0000027 ... P0A7L3 31594941
    27 6u48:CS (2.87) BS01 rna ? GO:0002181 ... P0AG48 31594941
    28 6u48:CT (2.87) BS01 rna ? GO:0002181 ... P61175 31594941
    29 6u48:CU (2.87) BS01 rna ? GO:0000027 ... P0ADZ0 31594941
    30 6u48:CV (2.87) BS01 rna ? GO:0000027 ... P60624 31594941
    31 6u48:CW (2.87) BS01 rna ? GO:0000027 ... P68919 31594941
    32 6u48:CW (2.87) BS02 rna ? GO:0000027 ... P68919 31594941
    33 6u48:CX (2.87) BS01 rna ? GO:0003735 ... P0A7L8 31594941
    34 6u48:CX (2.87) BS02 rna ? GO:0003735 ... P0A7L8 31594941
    35 6u48:CY (2.87) BS01 rna ? GO:0000027 ... P0A7M2 31594941
    36 6u48:CZ (2.87) BS01 rna ? GO:0000027 ... P0A7M6 31594941
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218