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BioLiP
Download all results in tab-seperated text for 387 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6trc:0 (2.98) BS01 CLA ? GO:0009522 ... Q8DGB4 N/A
    2 6trc:0 (2.98) BS02 CLA ? GO:0009522 ... Q8DGB4 N/A
    3 6trc:0 (2.98) BS03 CLA ? GO:0009522 ... Q8DGB4 N/A
    4 6trc:0 (2.98) BS04 CLA ? GO:0009522 ... Q8DGB4 N/A
    5 6trc:0 (2.98) BS05 CLA ? GO:0009522 ... Q8DGB4 N/A
    6 6trc:0 (2.98) BS06 CA ? GO:0009522 ... Q8DGB4 N/A
    7 6trc:0 (2.98) BS07 CLA ? GO:0009522 ... Q8DGB4 N/A
    8 6trc:0 (2.98) BS08 CLA ? GO:0009522 ... Q8DGB4 N/A
    9 6trc:0 (2.98) BS09 CLA ? GO:0009522 ... Q8DGB4 N/A
    10 6trc:1 (2.98) BS01 CL0 1.97.1.12 GO:0000287 ... P0A405 N/A
    11 6trc:1 (2.98) BS02 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    12 6trc:1 (2.98) BS03 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    13 6trc:1 (2.98) BS04 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    14 6trc:1 (2.98) BS05 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    15 6trc:1 (2.98) BS06 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    16 6trc:1 (2.98) BS07 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    17 6trc:1 (2.98) BS08 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    18 6trc:1 (2.98) BS09 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    19 6trc:1 (2.98) BS10 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    20 6trc:1 (2.98) BS11 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    21 6trc:1 (2.98) BS12 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    22 6trc:1 (2.98) BS13 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    23 6trc:1 (2.98) BS14 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    24 6trc:1 (2.98) BS15 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    25 6trc:1 (2.98) BS16 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    26 6trc:1 (2.98) BS17 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    27 6trc:1 (2.98) BS18 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    28 6trc:1 (2.98) BS19 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    29 6trc:1 (2.98) BS20 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    30 6trc:1 (2.98) BS21 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    31 6trc:1 (2.98) BS22 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    32 6trc:1 (2.98) BS23 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    33 6trc:1 (2.98) BS24 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    34 6trc:1 (2.98) BS25 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    35 6trc:1 (2.98) BS26 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    36 6trc:1 (2.98) BS27 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    37 6trc:1 (2.98) BS28 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    38 6trc:1 (2.98) BS29 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    39 6trc:1 (2.98) BS30 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    40 6trc:1 (2.98) BS31 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    41 6trc:1 (2.98) BS32 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    42 6trc:1 (2.98) BS33 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    43 6trc:1 (2.98) BS34 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    44 6trc:1 (2.98) BS35 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    45 6trc:1 (2.98) BS36 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    46 6trc:1 (2.98) BS37 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    47 6trc:1 (2.98) BS38 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    48 6trc:1 (2.98) BS39 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    49 6trc:1 (2.98) BS40 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    50 6trc:1 (2.98) BS41 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    51 6trc:1 (2.98) BS42 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    52 6trc:1 (2.98) BS43 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    53 6trc:1 (2.98) BS44 PQN 1.97.1.12 GO:0000287 ... P0A405 N/A
    54 6trc:1 (2.98) BS45 SF4 1.97.1.12 GO:0000287 ... P0A405 N/A
    55 6trc:1 (2.98) BS46 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    56 6trc:1 (2.98) BS47 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    57 6trc:1 (2.98) BS48 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    58 6trc:1 (2.98) BS49 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    59 6trc:1 (2.98) BS50 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    60 6trc:2 (2.98) BS01 peptide 1.97.1.12 GO:0000287 ... P0A407 N/A
    61 6trc:2 (2.98) BS02 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    62 6trc:2 (2.98) BS03 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    63 6trc:2 (2.98) BS04 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    64 6trc:2 (2.98) BS05 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    65 6trc:2 (2.98) BS06 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    66 6trc:2 (2.98) BS07 SF4 1.97.1.12 GO:0000287 ... P0A407 N/A
    67 6trc:2 (2.98) BS08 CA 1.97.1.12 GO:0000287 ... P0A407 N/A
    68 6trc:2 (2.98) BS09 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    69 6trc:2 (2.98) BS10 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    70 6trc:2 (2.98) BS11 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    71 6trc:2 (2.98) BS12 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    72 6trc:2 (2.98) BS13 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    73 6trc:2 (2.98) BS14 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    74 6trc:2 (2.98) BS15 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    75 6trc:2 (2.98) BS16 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    76 6trc:2 (2.98) BS17 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    77 6trc:2 (2.98) BS18 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    78 6trc:2 (2.98) BS19 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    79 6trc:2 (2.98) BS20 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    80 6trc:2 (2.98) BS21 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    81 6trc:2 (2.98) BS22 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    82 6trc:2 (2.98) BS23 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    83 6trc:2 (2.98) BS24 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    84 6trc:2 (2.98) BS25 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    85 6trc:2 (2.98) BS26 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    86 6trc:2 (2.98) BS27 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    87 6trc:2 (2.98) BS28 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    88 6trc:2 (2.98) BS29 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    89 6trc:2 (2.98) BS30 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    90 6trc:2 (2.98) BS31 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    91 6trc:2 (2.98) BS32 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    92 6trc:2 (2.98) BS33 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    93 6trc:2 (2.98) BS34 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    94 6trc:2 (2.98) BS35 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    95 6trc:2 (2.98) BS36 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    96 6trc:2 (2.98) BS37 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    97 6trc:2 (2.98) BS38 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    98 6trc:2 (2.98) BS39 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    99 6trc:2 (2.98) BS40 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    100 6trc:2 (2.98) BS41 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    101 6trc:2 (2.98) BS42 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    102 6trc:2 (2.98) BS43 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    103 6trc:2 (2.98) BS44 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    104 6trc:2 (2.98) BS45 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    105 6trc:2 (2.98) BS46 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    106 6trc:2 (2.98) BS47 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    107 6trc:2 (2.98) BS48 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    108 6trc:2 (2.98) BS49 PQN 1.97.1.12 GO:0000287 ... P0A407 N/A
    109 6trc:3 (2.98) BS01 SF4 1.97.1.12 GO:0009055 ... P0A415 N/A
    110 6trc:3 (2.98) BS02 SF4 1.97.1.12 GO:0009055 ... P0A415 N/A
    111 6trc:6 (2.98) BS01 peptide ? GO:0009522 ... P0A401 N/A
    112 6trc:6 (2.98) BS02 CLA ? GO:0009522 ... P0A401 N/A
    113 6trc:6 (2.98) BS03 CLA ? GO:0009522 ... P0A401 N/A
    114 6trc:6 (2.98) BS04 CLA ? GO:0009522 ... P0A401 N/A
    115 6trc:6 (2.98) BS05 CLA ? GO:0009522 ... P0A401 N/A
    116 6trc:6 (2.98) BS06 CLA ? GO:0009522 ... P0A401 N/A
    117 6trc:6 (2.98) BS07 CLA ? GO:0009522 ... P0A401 N/A
    118 6trc:7 (2.98) BS01 CLA ? GO:0009522 ... P0A427 N/A
    119 6trc:7 (2.98) BS02 CLA ? GO:0009522 ... P0A427 N/A
    120 6trc:7 (2.98) BS03 CLA ? GO:0009522 ... P0A427 N/A
    121 6trc:7 (2.98) BS04 CLA ? GO:0009522 ... P0A427 N/A
    122 6trc:8 (2.98) BS01 CLA ? GO:0009522 ... P0A429 N/A
    123 6trc:8 (2.98) BS02 CLA ? GO:0009522 ... P0A429 N/A
    124 6trc:8 (2.98) BS03 CLA ? GO:0009522 ... P0A429 N/A
    125 6trc:8 (2.98) BS04 CLA ? GO:0009522 ... P0A429 N/A
    126 6trc:9 (2.98) BS01 CLA ? GO:0009522 ... P0A425 N/A
    127 6trc:9 (2.98) BS02 CLA ? GO:0009522 ... P0A425 N/A
    128 6trc:9 (2.98) BS03 CLA ? GO:0009522 ... P0A425 N/A
    129 6trc:A (2.98) BS01 CL0 1.97.1.12 GO:0000287 ... P0A405 N/A
    130 6trc:A (2.98) BS02 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    131 6trc:A (2.98) BS03 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    132 6trc:A (2.98) BS04 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    133 6trc:A (2.98) BS05 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    134 6trc:A (2.98) BS06 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    135 6trc:A (2.98) BS07 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    136 6trc:A (2.98) BS08 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    137 6trc:A (2.98) BS09 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    138 6trc:A (2.98) BS10 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    139 6trc:A (2.98) BS11 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    140 6trc:A (2.98) BS12 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    141 6trc:A (2.98) BS13 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    142 6trc:A (2.98) BS14 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    143 6trc:A (2.98) BS15 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    144 6trc:A (2.98) BS16 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    145 6trc:A (2.98) BS17 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    146 6trc:A (2.98) BS18 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    147 6trc:A (2.98) BS19 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    148 6trc:A (2.98) BS20 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    149 6trc:A (2.98) BS21 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    150 6trc:A (2.98) BS22 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    151 6trc:A (2.98) BS23 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    152 6trc:A (2.98) BS24 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    153 6trc:A (2.98) BS25 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    154 6trc:A (2.98) BS26 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    155 6trc:A (2.98) BS27 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    156 6trc:A (2.98) BS28 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    157 6trc:A (2.98) BS29 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    158 6trc:A (2.98) BS30 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    159 6trc:A (2.98) BS31 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    160 6trc:A (2.98) BS32 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    161 6trc:A (2.98) BS33 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    162 6trc:A (2.98) BS34 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    163 6trc:A (2.98) BS35 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    164 6trc:A (2.98) BS36 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    165 6trc:A (2.98) BS37 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    166 6trc:A (2.98) BS38 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    167 6trc:A (2.98) BS39 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    168 6trc:A (2.98) BS40 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    169 6trc:A (2.98) BS41 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    170 6trc:A (2.98) BS42 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    171 6trc:A (2.98) BS43 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    172 6trc:A (2.98) BS44 PQN 1.97.1.12 GO:0000287 ... P0A405 N/A
    173 6trc:A (2.98) BS45 SF4 1.97.1.12 GO:0000287 ... P0A405 N/A
    174 6trc:A (2.98) BS46 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    175 6trc:A (2.98) BS47 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    176 6trc:A (2.98) BS48 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    177 6trc:A (2.98) BS49 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    178 6trc:A (2.98) BS50 CLA 1.97.1.12 GO:0000287 ... P0A405 N/A
    179 6trc:B (2.98) BS01 peptide 1.97.1.12 GO:0000287 ... P0A407 N/A
    180 6trc:B (2.98) BS02 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    181 6trc:B (2.98) BS03 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    182 6trc:B (2.98) BS04 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    183 6trc:B (2.98) BS05 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    184 6trc:B (2.98) BS06 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    185 6trc:B (2.98) BS07 SF4 1.97.1.12 GO:0000287 ... P0A407 N/A
    186 6trc:B (2.98) BS08 CA 1.97.1.12 GO:0000287 ... P0A407 N/A
    187 6trc:B (2.98) BS09 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    188 6trc:B (2.98) BS10 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    189 6trc:B (2.98) BS11 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    190 6trc:B (2.98) BS12 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    191 6trc:B (2.98) BS13 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    192 6trc:B (2.98) BS14 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    193 6trc:B (2.98) BS15 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    194 6trc:B (2.98) BS16 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    195 6trc:B (2.98) BS17 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    196 6trc:B (2.98) BS18 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    197 6trc:B (2.98) BS19 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    198 6trc:B (2.98) BS20 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    199 6trc:B (2.98) BS21 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A
    200 6trc:B (2.98) BS22 CLA 1.97.1.12 GO:0000287 ... P0A407 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218