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BioLiP
Download all results in tab-seperated text for 106 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6snt:A (2.8) BS01 rna ? GO:0000028 ... P32905 32203490
    2 6snt:AB (2.8) BS01 rna ? GO:0002181 ... P0CX41 32203490
    3 6snt:B (2.8) BS01 rna ? GO:0000462 ... P33442 32203490
    4 6snt:C (2.8) BS01 rna ? GO:0000054 ... P25443 32203490
    5 6snt:D (2.8) BS01 rna ? GO:0000054 ... P05750 32203490
    6 6snt:E (2.8) BS01 rna ? GO:0002181 ... P0CX35 32203490
    7 6snt:F (2.8) BS01 rna ? GO:0000028 ... P26783 32203490
    8 6snt:F (2.8) BS02 rna ? GO:0000028 ... P26783 32203490
    9 6snt:F (2.8) BS03 MG ? GO:0000028 ... P26783 32203490
    10 6snt:G (2.8) BS01 rna ? GO:0000462 ... P0CX37 32203490
    11 6snt:H (2.8) BS01 rna ? GO:0002181 ... P26786 32203490
    12 6snt:I (2.8) BS01 rna ? GO:0000462 ... P0CX39 32203490
    13 6snt:I (2.8) BS02 rna ? GO:0000462 ... P0CX39 32203490
    14 6snt:J (2.8) BS01 rna ? GO:0000462 ... O13516 32203490
    15 6snt:K (2.8) BS01 rna ? GO:0000054 ... Q08745 32203490
    16 6snt:L (2.8) BS01 rna ? GO:0000028 ... P0CX47 32203490
    17 6snt:M (2.8) BS01 rna ? GO:0000028 ... P48589 32203490
    18 6snt:N (2.8) BS01 rna ? GO:0000462 ... P05756 32203490
    19 6snt:O (2.8) BS01 rna ? GO:0000028 ... P06367 32203490
    20 6snt:P (2.8) BS01 rna ? GO:0000028 ... Q01855 32203490
    21 6snt:Q (2.8) BS01 rna ? GO:0000462 ... P0CX51 32203490
    22 6snt:R (2.8) BS01 rna ? GO:0000028 ... P14127 32203490
    23 6snt:S (2.8) BS01 rna ? GO:0000054 ... P0CX55 32203490
    24 6snt:T (2.8) BS01 rna ? GO:0000028 ... P07280 32203490
    25 6snt:U (2.8) BS01 rna ? GO:0000462 ... P38701 32203490
    26 6snt:V (2.8) BS01 rna ? GO:0000447 ... P0C0V8 32203490
    27 6snt:W (2.8) BS01 rna ? GO:0002181 ... P0C0W1 32203490
    28 6snt:X (2.8) BS01 rna ? GO:0000462 ... P0CX29 32203490
    29 6snt:Y (2.8) BS01 rna ? GO:0000462 ... P0CX31 32203490
    30 6snt:Z (2.8) BS01 rna ? GO:0002181 ... Q3E792 32203490
    31 6snt:a (2.8) BS01 rna ? GO:0000054 ... P39938 32203490
    32 6snt:a (2.8) BS02 rna ? GO:0000054 ... P39938 32203490
    33 6snt:aa (2.8) BS01 rna ? GO:0002181 ... P0CX25 32203490
    34 6snt:aa (2.8) BS02 ZN ? GO:0002181 ... P0CX25 32203490
    35 6snt:ab (2.8) BS01 rna ? GO:0002181 ... P0CX27 32203490
    36 6snt:ab (2.8) BS02 ZN ? GO:0002181 ... P0CX27 32203490
    37 6snt:ad (2.8) BS01 rna ? GO:0000027 ... P0CH08 32203490
    38 6snt:ad (2.8) BS02 ZN ? GO:0000027 ... P0CH08 32203490
    39 6snt:ae (2.8) BS01 rna ? GO:0002181 ... P04650 32203490
    40 6snt:ae (2.8) BS02 rna ? GO:0002181 ... P04650 32203490
    41 6snt:af (2.8) BS01 rna ? GO:0002181 ... P49167 32203490
    42 6snt:ag (2.8) BS01 rna ? GO:0000448 ... P49166 32203490
    43 6snt:ag (2.8) BS02 rna ? GO:0000448 ... P49166 32203490
    44 6snt:ag (2.8) BS03 ZN ? GO:0000448 ... P49166 32203490
    45 6snt:ah (2.8) BS01 rna ? GO:0002181 ... P05745 32203490
    46 6snt:ai (2.8) BS01 rna ? GO:0000463 ... P0CX84 32203490
    47 6snt:ai (2.8) BS02 rna ? GO:0000463 ... P0CX84 32203490
    48 6snt:aj (2.8) BS01 rna ? GO:0002181 ... P87262 32203490
    49 6snt:aj (2.8) BS02 ZN ? GO:0002181 ... P87262 32203490
    50 6snt:ak (2.8) BS01 rna ? GO:0000027 ... P05744 32203490
    51 6snt:al (2.8) BS01 rna ? GO:0002181 ... P38061 32203490
    52 6snt:am (2.8) BS01 rna ? GO:0002181 ... P0C2H8 32203490
    53 6snt:an (2.8) BS01 rna ? GO:0002181 ... P14120 32203490
    54 6snt:ao (2.8) BS01 rna ? GO:0002181 ... P05747 32203490
    55 6snt:ap (2.8) BS01 rna ? GO:0002181 ... P02406 32203490
    56 6snt:aq (2.8) BS01 rna ? GO:0002181 ... P0C2H6 32203490
    57 6snt:ar (2.8) BS01 rna ? GO:0002181 ... P05743 32203490
    58 6snt:ar (2.8) BS02 rna ? GO:0002181 ... P05743 32203490
    59 6snt:as (2.8) BS01 rna ? GO:0000027 ... P04456 32203490
    60 6snt:as (2.8) BS02 rna ? GO:0000027 ... P04456 32203490
    61 6snt:at (2.8) BS01 rna ? GO:0002181 ... P04449 32203490
    62 6snt:at (2.8) BS02 rna ? GO:0002181 ... P04449 32203490
    63 6snt:au (2.8) BS01 rna ? GO:0002181 ... P05749 32203490
    64 6snt:b (2.8) BS01 rna ? GO:0000028 ... P35997 32203490
    65 6snt:c (2.8) BS01 rna ? GO:0000028 ... P0C0X0 32203490
    66 6snt:c (2.8) BS02 rna ? GO:0000028 ... P0C0X0 32203490
    67 6snt:d (2.8) BS01 rna ? GO:0002181 ... P41057 32203490
    68 6snt:d (2.8) BS02 ZN ? GO:0002181 ... P41057 32203490
    69 6snt:e (2.8) BS01 rna ? GO:0002181 ... P0CX33 32203490
    70 6snt:f (2.8) BS01 rna ? GO:0000028 ... P05759 32203490
    71 6snt:f (2.8) BS02 ZN ? GO:0000028 ... P05759 32203490
    72 6snt:g (2.8) BS01 rna ? GO:0001965 ... P38011 32203490
    73 6snt:h (2.8) BS01 rna ? GO:0002181 ... P0CX45 32203490
    74 6snt:h (2.8) BS02 rna ? GO:0002181 ... P0CX45 32203490
    75 6snt:i (2.8) BS01 rna ? GO:0000027 ... P14126 32203490
    76 6snt:j (2.8) BS01 rna ? GO:0002181 ... P10664 32203490
    77 6snt:j (2.8) BS02 rna ? GO:0002181 ... P10664 32203490
    78 6snt:k (2.8) BS01 rna ? GO:0000027 ... P26321 32203490
    79 6snt:k (2.8) BS02 rna ? GO:0000027 ... P26321 32203490
    80 6snt:l (2.8) BS01 rna ? GO:0000027 ... P05739 32203490
    81 6snt:m (2.8) BS01 rna ? GO:0000463 ... P05737 32203490
    82 6snt:m (2.8) BS02 rna ? GO:0000463 ... P05737 32203490
    83 6snt:n (2.8) BS01 rna ? GO:0000470 ... P17076 32203490
    84 6snt:n (2.8) BS02 rna ? GO:0000470 ... P17076 32203490
    85 6snt:o (2.8) BS01 rna ? GO:0002181 ... P05738 32203490
    86 6snt:p (2.8) BS01 rna ? GO:0000027 ... P41805 32203490
    87 6snt:p (2.8) BS02 rna ? GO:0000027 ... P41805 32203490
    88 6snt:p (2.8) BS03 rna ? GO:0000027 ... P41805 32203490
    89 6snt:q (2.8) BS01 rna ? GO:0000027 ... P0C0W9 32203490
    90 6snt:q (2.8) BS02 rna ? GO:0000027 ... P0C0W9 32203490
    91 6snt:q (2.8) BS03 rna ? GO:0000027 ... P0C0W9 32203490
    92 6snt:r (2.8) BS01 rna ? GO:0002181 ... Q12690 32203490
    93 6snt:r (2.8) BS02 rna ? GO:0002181 ... Q12690 32203490
    94 6snt:s (2.8) BS01 rna ? GO:0000027 ... P36105 32203490
    95 6snt:t (2.8) BS01 rna ? GO:0002181 ... P05748 32203490
    96 6snt:t (2.8) BS02 rna ? GO:0002181 ... P05748 32203490
    97 6snt:u (2.8) BS01 rna ? GO:0000470 ... P26784 32203490
    98 6snt:v (2.8) BS01 rna ? GO:0000448 ... P05740 32203490
    99 6snt:v (2.8) BS02 rna ? GO:0000448 ... P05740 32203490
    100 6snt:w (2.8) BS01 rna ? GO:0002181 ... P0CX49 32203490
    101 6snt:x (2.8) BS01 rna ? GO:0002181 ... P0CX82 32203490
    102 6snt:x (2.8) BS02 rna ? GO:0002181 ... P0CX82 32203490
    103 6snt:y (2.8) BS01 rna ? GO:0002181 ... P0CX23 32203490
    104 6snt:y (2.8) BS02 rna ? GO:0002181 ... P0CX23 32203490
    105 6snt:z (2.8) BS01 rna ? GO:0002181 ... Q02753 32203490
    106 6snt:z (2.8) BS02 rna ? GO:0002181 ... Q02753 32203490
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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