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BioLiP
Download all results in tab-seperated text for 65 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6rxt:CB (7.0) BS01 rna ? GO:0000494 ... G0SGY2 31378463
    2 6rxt:CC (7.0) BS01 rna ? GO:0030515 ... G0S2U4 31378463
    3 6rxt:CC (7.0) BS02 rna ? GO:0030515 ... G0S2U4 31378463
    4 6rxt:CD (7.0) BS01 rna ? GO:0005634 ... G0RYF6 31378463
    5 6rxt:CD (7.0) BS02 rna ? GO:0005634 ... G0RYF6 31378463
    6 6rxt:CE (7.0) BS01 rna ? GO:0000398 ... G0SGM0 31378463
    7 6rxt:CE (7.0) BS02 rna ? GO:0000398 ... G0SGM0 31378463
    8 6rxt:CF (7.0) BS01 rna ? GO:0000398 ... G0SGM0 31378463
    9 6rxt:CG (7.0) BS01 rna ? GO:0005634 ... G0SG51 31378463
    10 6rxt:CH (7.0) BS01 rna ? GO:0000479 ... G0S0B1 31378463
    11 6rxt:CI (7.0) BS01 rna ? GO:0000462 ... G0S445 31378463
    12 6rxt:CI (7.0) BS02 rna ? GO:0000462 ... G0S445 31378463
    13 6rxt:CI (7.0) BS03 GTP ? GO:0000462 ... G0S445 31378463
    14 6rxt:CI (7.0) BS04 MG ? GO:0000462 ... G0S445 31378463
    15 6rxt:CJ (7.0) BS01 rna ? GO:0003723 ... G0SDL4 31378463
    16 6rxt:CJ (7.0) BS02 rna ? GO:0003723 ... G0SDL4 31378463
    17 6rxt:CK (7.0) BS01 rna ? GO:0005730 ... G0SE90 31378463
    18 6rxt:CL (7.0) BS01 rna ? GO:0005634 ... G0S9I7 31378463
    19 6rxt:CM (7.0) BS01 rna ? GO:0000462 ... G0RY94 31378463
    20 6rxt:CM (7.0) BS02 rna ? GO:0000462 ... G0RY94 31378463
    21 6rxt:CN (7.0) BS01 rna ? GO:0005730 ... G0SAY9 31378463
    22 6rxt:CP (7.0) BS01 rna ? GO:0003676 ... G0S3V7 31378463
    23 6rxt:CQ (7.0) BS01 rna ? GO:0003676 ... G0S3T2 31378463
    24 6rxt:CT (7.0) BS01 rna ? GO:0003723 ... G0S4E3 31378463
    25 6rxt:CT (7.0) BS02 rna ? GO:0003723 ... G0S4E3 31378463
    26 6rxt:CU (7.0) BS01 rna ? GO:0000462 ... G0S5F1 31378463
    27 6rxt:Ca (7.0) BS01 rna ? GO:0003735 ... G0S7T8 31378463
    28 6rxt:Cc (7.0) BS01 rna ? GO:0000028 ... G0S1Z0 31378463
    29 6rxt:Cg (7.0) BS01 rna ? GO:0003723 ... G0S0Z4 31378463
    30 6rxt:Ch (7.0) BS01 rna ? GO:0003735 ... G0RZM9 31378463
    31 6rxt:Ci (7.0) BS01 rna ? GO:0000028 ... G0SFL1 31378463
    32 6rxt:Cj (7.0) BS01 rna ? GO:0000462 ... G0SBR7 31378463
    33 6rxt:Cm (7.0) BS01 rna ? GO:0003735 ... G0SHI0 31378463
    34 6rxt:Cn (7.0) BS01 rna ? GO:0003735 ... G0RY17 31378463
    35 6rxt:Cp (7.0) BS01 rna ? GO:0000028 ... G0S9M9 31378463
    36 6rxt:UA (7.0) BS01 rna ? GO:0000028 ... G0SF93 31378463
    37 6rxt:UA (7.0) BS02 rna ? GO:0000028 ... G0SF93 31378463
    38 6rxt:UB (7.0) BS01 rna ? GO:0005634 ... G0SDW0 31378463
    39 6rxt:UB (7.0) BS02 rna ? GO:0005634 ... G0SDW0 31378463
    40 6rxt:UC (7.0) BS01 rna ? GO:0000462 ... G0S4H3 31378463
    41 6rxt:UD (7.0) BS01 rna ? GO:0000462 ... G0SCT7 31378463
    42 6rxt:UE (7.0) BS01 rna ? GO:0000462 ... G0RYX2 31378463
    43 6rxt:UF (7.0) BS01 rna ? GO:0000462 ... G0S387 31378463
    44 6rxt:UF (7.0) BS02 rna ? GO:0000462 ... G0S387 31378463
    45 6rxt:UG (7.0) BS01 rna ? GO:0000462 ... G0RZ99 31378463
    46 6rxt:UG (7.0) BS02 rna ? GO:0000462 ... G0RZ99 31378463
    47 6rxt:UH (7.0) BS01 rna ? GO:0005634 ... P0CT47 31378463
    48 6rxt:UJ (7.0) BS01 rna ? GO:0000462 ... G0S5L1 31378463
    49 6rxt:UK (7.0) BS01 rna ? GO:0005634 ... G0SF32 31378463
    50 6rxt:UK (7.0) BS02 rna ? GO:0005634 ... G0SF32 31378463
    51 6rxt:UL (7.0) BS01 rna ? GO:0005634 ... G0RZL9 31378463
    52 6rxt:UM (7.0) BS01 rna ? GO:0000472 ... G0SG95 31378463
    53 6rxt:UN (7.0) BS01 rna ? GO:0005634 ... G0S8Y4 31378463
    54 6rxt:UO (7.0) BS01 rna ? GO:0005634 ... G0SEI5 31378463
    55 6rxt:UP (7.0) BS01 rna ? GO:0006364 ... G0S612 31378463
    56 6rxt:UQ (7.0) BS01 rna ? GO:0003723 ... G0SCS8 31378463
    57 6rxt:UR (7.0) BS01 rna ? GO:0005730 ... G0SBN9 31378463
    58 6rxt:UR (7.0) BS02 rna ? GO:0005730 ... G0SBN9 31378463
    59 6rxt:US (7.0) BS01 rna ? GO:0005730 ... G0RZL4 31378463
    60 6rxt:UU (7.0) BS01 rna ? GO:0006364 ... G0S872 31378463
    61 6rxt:UU (7.0) BS02 rna ? GO:0006364 ... G0S872 31378463
    62 6rxt:UX (7.0) BS01 rna N/A GO:0032040 ... N/A 31378463
    63 6rxt:UX (7.0) BS02 rna N/A GO:0032040 ... N/A 31378463
    64 6rxt:UX (7.0) BS03 ZN N/A GO:0032040 ... N/A 31378463
    65 6rxt:UZ (7.0) BS01 rna ? GO:0000470 ... G0S7X0 31378463
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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