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BioLiP
Download all results in tab-seperated text for 36 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6rw5:0 (3.14) BS01 rna ? GO:0003735 ... P82930 32522994
    2 6rw5:2 (3.14) BS01 rna ? GO:0001650 ... Q96BP2 32522994
    3 6rw5:3 (3.14) BS01 rna ? GO:0005515 ... Q9NWT8 32522994
    4 6rw5:7 (3.14) BS01 rna ? GO:0003723 ... P46199 32522994
    5 6rw5:7 (3.14) BS02 GNP ? GO:0003723 ... P46199 32522994
    6 6rw5:7 (3.14) BS03 MG ? GO:0003723 ... P46199 32522994
    7 6rw5:8 (3.14) BS01 rna ? GO:0003743 ... Q9H2K0 32522994
    8 6rw5:B (3.14) BS01 rna ? GO:0003735 ... Q9Y399 32522994
    9 6rw5:B (3.14) BS02 MG ? GO:0003735 ... Q9Y399 32522994
    10 6rw5:C (3.14) BS01 rna ? GO:0003723 ... Q96EL2 32522994
    11 6rw5:D (3.14) BS01 rna ? GO:0003723 ... P82675 32522994
    12 6rw5:E (3.14) BS01 rna ? GO:0003735 ... P82932 32522994
    13 6rw5:F (3.14) BS01 rna ? GO:0000028 ... Q9Y2R9 32522994
    14 6rw5:G (3.14) BS01 rna ? GO:0003723 ... P82933 32522994
    15 6rw5:H (3.14) BS01 rna ? GO:0003674 ... P82664 32522994
    16 6rw5:I (3.14) BS01 rna ? GO:0003723 ... P82912 32522994
    17 6rw5:J (3.14) BS01 rna ? GO:0003723 ... O15235 32522994
    18 6rw5:K (3.14) BS01 rna ? GO:0003723 ... O60783 32522994
    19 6rw5:L (3.14) BS01 rna ? GO:0003723 ... P82914 32522994
    20 6rw5:L (3.14) BS02 NAD ? GO:0003723 ... P82914 32522994
    21 6rw5:M (3.14) BS01 rna ? GO:0003735 ... Q9Y3D3 32522994
    22 6rw5:N (3.14) BS01 rna ? GO:0003735 ... Q9Y2R5 32522994
    23 6rw5:O (3.14) BS01 rna ? GO:0003735 ... Q9Y676 32522994
    24 6rw5:O (3.14) BS02 ZN ? GO:0003735 ... Q9Y676 32522994
    25 6rw5:P (3.14) BS01 rna ? GO:0003735 ... Q9Y3D5 32522994
    26 6rw5:P (3.14) BS02 FES ? GO:0003735 ... Q9Y3D5 32522994
    27 6rw5:Q (3.14) BS01 rna ? GO:0003723 ... P82921 32522994
    28 6rw5:S (3.14) BS01 rna ? GO:0003723 ... Q9Y3D9 32522994
    29 6rw5:T (3.14) BS01 rna ? GO:0003735 ... P82663 32522994
    30 6rw5:T (3.14) BS02 FES ? GO:0003735 ... P82663 32522994
    31 6rw5:U (3.14) BS01 rna ? GO:0003723 ... Q9BYN8 32522994
    32 6rw5:V (3.14) BS01 rna ? GO:0000049 ... Q92552 32522994
    33 6rw5:X (3.14) BS01 rna ? GO:0003723 ... P51398 32522994
    34 6rw5:X (3.14) BS02 ATP ? GO:0003723 ... P51398 32522994
    35 6rw5:X (3.14) BS03 GNP ? GO:0003723 ... P51398 32522994
    36 6rw5:Z (3.14) BS01 rna ? GO:0003735 ... Q9Y291 32522994
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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