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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 162 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6rhz:1 (3.2) BS01 CLA ? GO:0009765 ... C1K003 32123351
    2 6rhz:1 (3.2) BS02 CLA ? GO:0009765 ... C1K003 32123351
    3 6rhz:1 (3.2) BS03 CLA ? GO:0009765 ... C1K003 32123351
    4 6rhz:1 (3.2) BS04 CLA ? GO:0009765 ... C1K003 32123351
    5 6rhz:1 (3.2) BS05 CLA ? GO:0009765 ... C1K003 32123351
    6 6rhz:1 (3.2) BS06 CLA ? GO:0009765 ... C1K003 32123351
    7 6rhz:1 (3.2) BS07 CLA ? GO:0009765 ... C1K003 32123351
    8 6rhz:1 (3.2) BS08 CLA ? GO:0009765 ... C1K003 32123351
    9 6rhz:1 (3.2) BS09 CHL ? GO:0009765 ... C1K003 32123351
    10 6rhz:1 (3.2) BS10 CHL ? GO:0009765 ... C1K003 32123351
    11 6rhz:1 (3.2) BS11 CLA ? GO:0009765 ... C1K003 32123351
    12 6rhz:1 (3.2) BS12 CLA ? GO:0009765 ... C1K003 32123351
    13 6rhz:1 (3.2) BS13 CLA ? GO:0009765 ... C1K003 32123351
    14 6rhz:1 (3.2) BS14 CLA ? GO:0009765 ... C1K003 32123351
    15 6rhz:2 (3.2) BS01 CLA N/A GO:0009765 ... N/A 32123351
    16 6rhz:2 (3.2) BS02 CLA N/A GO:0009765 ... N/A 32123351
    17 6rhz:2 (3.2) BS03 CLA N/A GO:0009765 ... N/A 32123351
    18 6rhz:2 (3.2) BS04 CLA N/A GO:0009765 ... N/A 32123351
    19 6rhz:2 (3.2) BS05 CLA N/A GO:0009765 ... N/A 32123351
    20 6rhz:2 (3.2) BS06 CLA N/A GO:0009765 ... N/A 32123351
    21 6rhz:2 (3.2) BS07 CLA N/A GO:0009765 ... N/A 32123351
    22 6rhz:2 (3.2) BS08 CLA N/A GO:0009765 ... N/A 32123351
    23 6rhz:2 (3.2) BS09 CHL N/A GO:0009765 ... N/A 32123351
    24 6rhz:2 (3.2) BS10 CHL N/A GO:0009765 ... N/A 32123351
    25 6rhz:2 (3.2) BS11 CHL N/A GO:0009765 ... N/A 32123351
    26 6rhz:2 (3.2) BS12 CLA N/A GO:0009765 ... N/A 32123351
    27 6rhz:2 (3.2) BS13 CHL N/A GO:0009765 ... N/A 32123351
    28 6rhz:2 (3.2) BS14 CLA N/A GO:0009765 ... N/A 32123351
    29 6rhz:2 (3.2) BS15 CLA N/A GO:0009765 ... N/A 32123351
    30 6rhz:3 (3.2) BS01 CLA ? GO:0009765 ... C1K004 32123351
    31 6rhz:3 (3.2) BS02 CHL ? GO:0009765 ... C1K004 32123351
    32 6rhz:3 (3.2) BS03 CLA ? GO:0009765 ... C1K004 32123351
    33 6rhz:3 (3.2) BS04 CLA ? GO:0009765 ... C1K004 32123351
    34 6rhz:3 (3.2) BS05 CHL ? GO:0009765 ... C1K004 32123351
    35 6rhz:3 (3.2) BS06 CLA ? GO:0009765 ... C1K004 32123351
    36 6rhz:3 (3.2) BS07 CLA ? GO:0009765 ... C1K004 32123351
    37 6rhz:3 (3.2) BS08 CLA ? GO:0009765 ... C1K004 32123351
    38 6rhz:3 (3.2) BS09 CLA ? GO:0009765 ... C1K004 32123351
    39 6rhz:3 (3.2) BS10 CLA ? GO:0009765 ... C1K004 32123351
    40 6rhz:3 (3.2) BS11 CLA ? GO:0009765 ... C1K004 32123351
    41 6rhz:3 (3.2) BS12 CLA ? GO:0009765 ... C1K004 32123351
    42 6rhz:3 (3.2) BS13 CLA ? GO:0009765 ... C1K004 32123351
    43 6rhz:3 (3.2) BS14 CLA ? GO:0009765 ... C1K004 32123351
    44 6rhz:3 (3.2) BS15 CLA ? GO:0009765 ... C1K004 32123351
    45 6rhz:3 (3.2) BS16 CLA ? GO:0009765 ... C1K004 32123351
    46 6rhz:3 (3.2) BS17 CLA ? GO:0009765 ... C1K004 32123351
    47 6rhz:3 (3.2) BS18 CLA ? GO:0009765 ... C1K004 32123351
    48 6rhz:4 (3.2) BS01 CLA N/A GO:0009765 ... N/A 32123351
    49 6rhz:4 (3.2) BS02 CHL N/A GO:0009765 ... N/A 32123351
    50 6rhz:4 (3.2) BS03 CLA N/A GO:0009765 ... N/A 32123351
    51 6rhz:4 (3.2) BS04 CLA N/A GO:0009765 ... N/A 32123351
    52 6rhz:4 (3.2) BS05 CLA N/A GO:0009765 ... N/A 32123351
    53 6rhz:4 (3.2) BS06 CLA N/A GO:0009765 ... N/A 32123351
    54 6rhz:4 (3.2) BS07 CLA N/A GO:0009765 ... N/A 32123351
    55 6rhz:4 (3.2) BS08 CLA N/A GO:0009765 ... N/A 32123351
    56 6rhz:4 (3.2) BS09 CLA N/A GO:0009765 ... N/A 32123351
    57 6rhz:4 (3.2) BS10 CHL N/A GO:0009765 ... N/A 32123351
    58 6rhz:4 (3.2) BS11 CHL N/A GO:0009765 ... N/A 32123351
    59 6rhz:4 (3.2) BS12 CLA N/A GO:0009765 ... N/A 32123351
    60 6rhz:4 (3.2) BS13 CLA N/A GO:0009765 ... N/A 32123351
    61 6rhz:A (3.2) BS01 CL0 1.97.1.12 GO:0000287 ... D0FXV2 32123351
    62 6rhz:A (3.2) BS02 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32123351
    63 6rhz:A (3.2) BS03 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32123351
    64 6rhz:A (3.2) BS04 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32123351
    65 6rhz:A (3.2) BS05 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32123351
    66 6rhz:A (3.2) BS06 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32123351
    67 6rhz:A (3.2) BS07 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32123351
    68 6rhz:A (3.2) BS08 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32123351
    69 6rhz:A (3.2) BS09 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32123351
    70 6rhz:A (3.2) BS10 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32123351
    71 6rhz:A (3.2) BS11 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32123351
    72 6rhz:A (3.2) BS12 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32123351
    73 6rhz:A (3.2) BS13 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32123351
    74 6rhz:A (3.2) BS14 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32123351
    75 6rhz:A (3.2) BS15 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32123351
    76 6rhz:A (3.2) BS16 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32123351
    77 6rhz:A (3.2) BS17 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32123351
    78 6rhz:A (3.2) BS18 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32123351
    79 6rhz:A (3.2) BS19 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32123351
    80 6rhz:A (3.2) BS20 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32123351
    81 6rhz:A (3.2) BS21 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32123351
    82 6rhz:A (3.2) BS22 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32123351
    83 6rhz:A (3.2) BS23 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32123351
    84 6rhz:A (3.2) BS24 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32123351
    85 6rhz:A (3.2) BS25 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32123351
    86 6rhz:A (3.2) BS26 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32123351
    87 6rhz:A (3.2) BS27 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32123351
    88 6rhz:A (3.2) BS28 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32123351
    89 6rhz:A (3.2) BS29 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32123351
    90 6rhz:A (3.2) BS30 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32123351
    91 6rhz:A (3.2) BS31 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32123351
    92 6rhz:A (3.2) BS32 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32123351
    93 6rhz:A (3.2) BS33 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32123351
    94 6rhz:A (3.2) BS34 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32123351
    95 6rhz:A (3.2) BS35 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32123351
    96 6rhz:A (3.2) BS36 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32123351
    97 6rhz:A (3.2) BS37 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32123351
    98 6rhz:A (3.2) BS38 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32123351
    99 6rhz:A (3.2) BS39 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32123351
    100 6rhz:A (3.2) BS40 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32123351
    101 6rhz:A (3.2) BS41 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32123351
    102 6rhz:A (3.2) BS42 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32123351
    103 6rhz:A (3.2) BS43 PQN 1.97.1.12 GO:0000287 ... D0FXV2 32123351
    104 6rhz:A (3.2) BS44 SF4 1.97.1.12 GO:0000287 ... D0FXV2 32123351
    105 6rhz:A (3.2) BS45 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32123351
    106 6rhz:A (3.2) BS46 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32123351
    107 6rhz:B (3.2) BS01 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32123351
    108 6rhz:B (3.2) BS02 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32123351
    109 6rhz:B (3.2) BS03 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32123351
    110 6rhz:B (3.2) BS04 SF4 1.97.1.12 GO:0000287 ... D0FXZ0 32123351
    111 6rhz:B (3.2) BS05 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32123351
    112 6rhz:B (3.2) BS06 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32123351
    113 6rhz:B (3.2) BS07 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32123351
    114 6rhz:B (3.2) BS08 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32123351
    115 6rhz:B (3.2) BS09 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32123351
    116 6rhz:B (3.2) BS10 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32123351
    117 6rhz:B (3.2) BS11 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32123351
    118 6rhz:B (3.2) BS12 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32123351
    119 6rhz:B (3.2) BS13 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32123351
    120 6rhz:B (3.2) BS14 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32123351
    121 6rhz:B (3.2) BS15 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32123351
    122 6rhz:B (3.2) BS16 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32123351
    123 6rhz:B (3.2) BS17 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32123351
    124 6rhz:B (3.2) BS18 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32123351
    125 6rhz:B (3.2) BS19 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32123351
    126 6rhz:B (3.2) BS20 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32123351
    127 6rhz:B (3.2) BS21 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32123351
    128 6rhz:B (3.2) BS22 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32123351
    129 6rhz:B (3.2) BS23 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32123351
    130 6rhz:B (3.2) BS24 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32123351
    131 6rhz:B (3.2) BS25 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32123351
    132 6rhz:B (3.2) BS26 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32123351
    133 6rhz:B (3.2) BS27 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32123351
    134 6rhz:B (3.2) BS28 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32123351
    135 6rhz:B (3.2) BS29 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32123351
    136 6rhz:B (3.2) BS30 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32123351
    137 6rhz:B (3.2) BS31 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32123351
    138 6rhz:B (3.2) BS32 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32123351
    139 6rhz:B (3.2) BS33 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32123351
    140 6rhz:B (3.2) BS34 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32123351
    141 6rhz:B (3.2) BS35 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32123351
    142 6rhz:B (3.2) BS36 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32123351
    143 6rhz:B (3.2) BS37 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32123351
    144 6rhz:B (3.2) BS38 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32123351
    145 6rhz:B (3.2) BS39 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32123351
    146 6rhz:B (3.2) BS40 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32123351
    147 6rhz:B (3.2) BS41 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32123351
    148 6rhz:B (3.2) BS42 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32123351
    149 6rhz:B (3.2) BS43 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32123351
    150 6rhz:B (3.2) BS44 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32123351
    151 6rhz:B (3.2) BS45 PQN 1.97.1.12 GO:0000287 ... D0FXZ0 32123351
    152 6rhz:B (3.2) BS46 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32123351
    153 6rhz:C (3.2) BS01 SF4 1.97.1.12 GO:0009055 ... D0FXW7 32123351
    154 6rhz:C (3.2) BS02 SF4 1.97.1.12 GO:0009055 ... D0FXW7 32123351
    155 6rhz:F (3.2) BS01 CLA N/A GO:0009522 ... N/A 32123351
    156 6rhz:F (3.2) BS02 CLA N/A GO:0009522 ... N/A 32123351
    157 6rhz:F (3.2) BS03 CLA N/A GO:0009522 ... N/A 32123351
    158 6rhz:F (3.2) BS04 CLA N/A GO:0009522 ... N/A 32123351
    159 6rhz:F (3.2) BS05 CLA N/A GO:0009522 ... N/A 32123351
    160 6rhz:J (3.2) BS01 CLA ? GO:0009507 ... D0FXW0 32123351
    161 6rhz:J (3.2) BS02 CLA ? GO:0009507 ... D0FXW0 32123351
    162 6rhz:J (3.2) BS03 CLA ? GO:0009507 ... D0FXW0 32123351
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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