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BioLiP
Download all results in tab-seperated text for 14 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6rfs:A (4.04) BS01 SF4 1.6.99.3 GO:0003954 ... F2Z6F1 31844670
    2 6rfs:A (4.04) BS02 SF4 1.6.99.3 GO:0003954 ... F2Z6F1 31844670
    3 6rfs:A (4.04) BS03 FES 1.6.99.3 GO:0003954 ... F2Z6F1 31844670
    4 6rfs:B (4.04) BS01 SF4 7.1.1.2 GO:0005739 ... F2Z660 31844670
    5 6rfs:B (4.04) BS02 FMN 7.1.1.2 GO:0005739 ... F2Z660 31844670
    6 6rfs:C (4.04) BS01 SF4 1.6.99.3 GO:0005739 ... F2Z626 31844670
    7 6rfs:E (4.04) BS01 NDP ? GO:0005739 ... Q6C7X4 31844670
    8 6rfs:H (4.04) BS01 FES 1.6.99.3 GO:0016491 ... F2Z6C0 31844670
    9 6rfs:I (4.04) BS01 SF4 1.6.99.3 GO:0003954 ... F2Z619 31844670
    10 6rfs:I (4.04) BS02 SF4 1.6.99.3 GO:0003954 ... F2Z619 31844670
    11 6rfs:K (4.04) BS01 SF4 1.6.99.3 GO:0008137 ... Q6C2Q1 31844670
    12 6rfs:M (4.04) BS01 ZN ? GO:0005739 ... Q6C8J9 31844670
    13 6rfs:O (4.04) BS01 ZMP ? GO:0000035 ... Q6C926 31844670
    14 6rfs:P (4.04) BS01 ZMP ? GO:0005739 ... Q6CI60 31844670
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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