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BioLiP
Download all results in tab-seperated text for 131 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6qnq:11 (3.5) BS01 rna ? GO:0002181 ... P60405 31175275
    2 6qnq:12 (3.5) BS01 rna ? GO:0003735 ... P80371 31175275
    3 6qnq:15 (3.5) BS01 rna ? GO:0003729 ... P60488 31175275
    4 6qnq:19 (3.5) BS01 rna ? GO:0002181 ... P60405 31175275
    5 6qnq:1A (3.5) BS01 rna ? GO:0000049 ... Q5SHN7 31175275
    6 6qnq:1E (3.5) BS01 rna ? GO:0003735 ... P80371 31175275
    7 6qnq:1I (3.5) BS01 rna ? GO:0000049 ... Q5SHN7 31175275
    8 6qnq:21 (3.5) BS01 rna ? GO:0003735 ... Q5SHN8 31175275
    9 6qnq:22 (3.5) BS01 rna ? GO:0003676 ... P80372 31175275
    10 6qnq:22 (3.5) BS02 rna ? GO:0003676 ... P80372 31175275
    11 6qnq:25 (3.5) BS01 rna ? GO:0003735 ... Q5SHP8 31175275
    12 6qnq:25 (3.5) BS02 rna ? GO:0003735 ... Q5SHP8 31175275
    13 6qnq:29 (3.5) BS01 rna ? GO:0003735 ... Q5SHN8 31175275
    14 6qnq:2A (3.5) BS01 rna ? GO:0003735 ... P80376 31175275
    15 6qnq:2E (3.5) BS01 rna ? GO:0003676 ... P80372 31175275
    16 6qnq:2I (3.5) BS01 rna ? GO:0003735 ... P80376 31175275
    17 6qnq:31 (3.5) BS01 rna ? GO:0003735 ... Q5SHN9 31175275
    18 6qnq:32 (3.5) BS01 rna ? GO:0003723 ... P80373 31175275
    19 6qnq:32 (3.5) BS02 SF4 ? GO:0003723 ... P80373 31175275
    20 6qnq:35 (3.5) BS01 rna ? GO:0003735 ... Q5SHQ7 31175275
    21 6qnq:38 (3.5) BS01 rna ? GO:0003735 ... Q8VVE3 31175275
    22 6qnq:39 (3.5) BS01 rna ? GO:0003735 ... Q5SHN9 31175275
    23 6qnq:3A (3.5) BS01 rna ? GO:0000049 ... Q5SHN3 31175275
    24 6qnq:3E (3.5) BS01 rna ? GO:0003723 ... P80373 31175275
    25 6qnq:3E (3.5) BS02 SF4 ? GO:0003723 ... P80373 31175275
    26 6qnq:3I (3.5) BS01 rna ? GO:0000049 ... Q5SHN3 31175275
    27 6qnq:41 (3.5) BS01 rna ? GO:0000049 ... Q5SHQ0 31175275
    28 6qnq:41 (3.5) BS02 rna ? GO:0000049 ... Q5SHQ0 31175275
    29 6qnq:42 (3.5) BS01 rna ? GO:0003723 ... Q5SHQ5 31175275
    30 6qnq:42 (3.5) BS02 rna ? GO:0003723 ... Q5SHQ5 31175275
    31 6qnq:45 (3.5) BS01 rna ? GO:0000049 ... P60489 31175275
    32 6qnq:45 (3.5) BS02 rna ? GO:0000049 ... P60489 31175275
    33 6qnq:49 (3.5) BS01 rna ? GO:0000049 ... Q5SHQ0 31175275
    34 6qnq:49 (3.5) BS02 rna ? GO:0000049 ... Q5SHQ0 31175275
    35 6qnq:49 (3.5) BS03 rna ? GO:0000049 ... Q5SHQ0 31175275
    36 6qnq:4A (3.5) BS01 rna ? GO:0000049 ... P80377 31175275
    37 6qnq:4E (3.5) BS01 rna ? GO:0003723 ... Q5SHQ5 31175275
    38 6qnq:4E (3.5) BS02 rna ? GO:0003723 ... Q5SHQ5 31175275
    39 6qnq:4I (3.5) BS01 rna ? GO:0000049 ... P80377 31175275
    40 6qnq:51 (3.5) BS01 rna ? GO:0002181 ... P0DOY8 31175275
    41 6qnq:52 (3.5) BS01 rna ? GO:0003735 ... Q5SLP8 31175275
    42 6qnq:55 (3.5) BS01 rna ? GO:0003735 ... Q9Z9H5 31175275
    43 6qnq:55 (3.5) BS02 MG ? GO:0003735 ... Q9Z9H5 31175275
    44 6qnq:58 (3.5) BS01 rna ? GO:0003729 ... P60488 31175275
    45 6qnq:59 (3.5) BS01 rna ? GO:0002181 ... P0DOY8 31175275
    46 6qnq:5A (3.5) BS01 rna ? GO:0003735 ... P0DOY6 31175275
    47 6qnq:5A (3.5) BS02 ZN ? GO:0003735 ... P0DOY6 31175275
    48 6qnq:5E (3.5) BS01 rna ? GO:0003735 ... Q5SLP8 31175275
    49 6qnq:5I (3.5) BS01 rna ? GO:0003735 ... P0DOY6 31175275
    50 6qnq:5I (3.5) BS02 ZN ? GO:0003735 ... P0DOY6 31175275
    51 6qnq:61 (3.5) BS01 rna ? GO:0003735 ... Q5SLQ1 31175275
    52 6qnq:62 (3.5) BS01 rna ? GO:0000028 ... P17291 31175275
    53 6qnq:62 (3.5) BS02 rna ? GO:0000028 ... P17291 31175275
    54 6qnq:65 (3.5) BS01 rna ? GO:0003735 ... Q5SHQ4 31175275
    55 6qnq:65 (3.5) BS02 rna ? GO:0003735 ... Q5SHQ4 31175275
    56 6qnq:68 (3.5) BS01 rna ? GO:0003735 ... Q5SHP8 31175275
    57 6qnq:68 (3.5) BS02 rna ? GO:0003735 ... Q5SHP8 31175275
    58 6qnq:69 (3.5) BS01 rna ? GO:0003735 ... Q5SLQ1 31175275
    59 6qnq:69 (3.5) BS02 rna ? GO:0003735 ... Q5SLQ1 31175275
    60 6qnq:6A (3.5) BS01 rna ? GO:0003735 ... Q5SJ76 31175275
    61 6qnq:6E (3.5) BS01 rna ? GO:0000028 ... P17291 31175275
    62 6qnq:6E (3.5) BS02 rna ? GO:0000028 ... P17291 31175275
    63 6qnq:6I (3.5) BS01 rna ? GO:0003735 ... Q5SJ76 31175275
    64 6qnq:6I (3.5) BS02 rna ? GO:0003735 ... Q5SJ76 31175275
    65 6qnq:71 (3.5) BS01 rna ? GO:0000049 ... Q5SLP7 31175275
    66 6qnq:71 (3.5) BS02 rna ? GO:0000049 ... Q5SLP7 31175275
    67 6qnq:72 (3.5) BS01 rna ? GO:0003735 ... P0DOY9 31175275
    68 6qnq:75 (3.5) BS01 rna ? GO:0003735 ... P60490 31175275
    69 6qnq:75 (3.5) BS02 rna ? GO:0003735 ... P60490 31175275
    70 6qnq:78 (3.5) BS01 rna ? GO:0003735 ... Q5SHQ7 31175275
    71 6qnq:78 (3.5) BS02 MG ? GO:0003735 ... Q5SHQ7 31175275
    72 6qnq:7A (3.5) BS01 rna ? GO:0003735 ... Q5SJH3 31175275
    73 6qnq:7E (3.5) BS01 rna ? GO:0003735 ... P0DOY9 31175275
    74 6qnq:7I (3.5) BS01 rna ? GO:0003735 ... Q5SJH3 31175275
    75 6qnq:82 (3.5) BS01 rna ? GO:0000049 ... P80374 31175275
    76 6qnq:85 (3.5) BS01 rna ? GO:0000027 ... P60491 31175275
    77 6qnq:88 (3.5) BS01 rna ? GO:0000049 ... P60489 31175275
    78 6qnq:88 (3.5) BS02 rna ? GO:0000049 ... P60489 31175275
    79 6qnq:88 (3.5) BS03 rna ? GO:0000049 ... P60489 31175275
    80 6qnq:8A (3.5) BS01 rna ? GO:0003735 ... P0DOY7 31175275
    81 6qnq:8E (3.5) BS01 rna ? GO:0000049 ... P80374 31175275
    82 6qnq:8I (3.5) BS01 rna ? GO:0003735 ... P0DOY7 31175275
    83 6qnq:95 (3.5) BS01 rna ? GO:0003723 ... P60492 31175275
    84 6qnq:98 (3.5) BS01 rna ? GO:0003735 ... Q9Z9H5 31175275
    85 6qnq:9A (3.5) BS01 rna ? GO:0003735 ... Q5SLQ0 31175275
    86 6qnq:9I (3.5) BS01 rna ? GO:0003735 ... Q5SLQ0 31175275
    87 6qnq:A5 (3.5) BS01 rna ? GO:0003735 ... Q5SHP3 31175275
    88 6qnq:A8 (3.5) BS01 rna ? GO:0003735 ... Q5SHQ4 31175275
    89 6qnq:A8 (3.5) BS02 rna ? GO:0003735 ... Q5SHQ4 31175275
    90 6qnq:AA (3.5) BS01 rna ? GO:0000028 ... Q5SHP2 31175275
    91 6qnq:AI (3.5) BS01 rna ? GO:0000028 ... Q5SHP2 31175275
    92 6qnq:B5 (3.5) BS01 rna ? GO:0000027 ... Q5SHP0 31175275
    93 6qnq:B8 (3.5) BS01 rna ? GO:0003735 ... P60490 31175275
    94 6qnq:B8 (3.5) BS02 rna ? GO:0003735 ... P60490 31175275
    95 6qnq:BA (3.5) BS01 rna ? GO:0003723 ... P80380 31175275
    96 6qnq:BI (3.5) BS01 rna ? GO:0003723 ... P80380 31175275
    97 6qnq:BI (3.5) BS02 MG ? GO:0003723 ... P80380 31175275
    98 6qnq:C5 (3.5) BS01 rna ? GO:0003723 ... Q5SHP9 31175275
    99 6qnq:C8 (3.5) BS01 rna ? GO:0000027 ... P60491 31175275
    100 6qnq:D5 (3.5) BS01 rna ? GO:0003723 ... Q5SHZ1 31175275
    101 6qnq:D5 (3.5) BS02 rna ? GO:0003723 ... Q5SHZ1 31175275
    102 6qnq:D8 (3.5) BS01 rna ? GO:0003723 ... P60492 31175275
    103 6qnq:E5 (3.5) BS01 rna ? GO:0003735 ... P60493 31175275
    104 6qnq:E5 (3.5) BS02 rna ? GO:0003735 ... P60493 31175275
    105 6qnq:E5 (3.5) BS03 rna ? GO:0003735 ... P60493 31175275
    106 6qnq:E8 (3.5) BS01 rna ? GO:0003735 ... Q5SHP3 31175275
    107 6qnq:F5 (3.5) BS01 rna ? GO:0003735 ... P60494 31175275
    108 6qnq:F5 (3.5) BS02 rna ? GO:0003735 ... P60494 31175275
    109 6qnq:F8 (3.5) BS01 rna ? GO:0000027 ... Q5SHP0 31175275
    110 6qnq:G5 (3.5) BS01 rna ? GO:0003735 ... Q5SHP6 31175275
    111 6qnq:G8 (3.5) BS01 rna ? GO:0003723 ... Q5SHP9 31175275
    112 6qnq:H5 (3.5) BS01 rna ? GO:0003735 ... Q5SHQ6 31175275
    113 6qnq:H5 (3.5) BS02 rna ? GO:0003735 ... Q5SHQ6 31175275
    114 6qnq:H8 (3.5) BS01 rna ? GO:0003723 ... Q5SHZ1 31175275
    115 6qnq:H8 (3.5) BS02 rna ? GO:0003723 ... Q5SHZ1 31175275
    116 6qnq:I5 (3.5) BS01 rna ? GO:0003735 ... Q5SJE1 31175275
    117 6qnq:I8 (3.5) BS01 rna ? GO:0003735 ... P60493 31175275
    118 6qnq:I8 (3.5) BS02 rna ? GO:0003735 ... P60493 31175275
    119 6qnq:J5 (3.5) BS01 rna ? GO:0003735 ... P80339 31175275
    120 6qnq:J8 (3.5) BS01 rna ? GO:0003735 ... P60494 31175275
    121 6qnq:K5 (3.5) BS01 rna ? GO:0000049 ... P35871 31175275
    122 6qnq:K8 (3.5) BS01 rna ? GO:0003735 ... Q5SHP6 31175275
    123 6qnq:L5 (3.5) BS01 rna ? GO:0003735 ... P80340 31175275
    124 6qnq:L8 (3.5) BS01 rna ? GO:0003735 ... Q5SHQ6 31175275
    125 6qnq:L8 (3.5) BS02 rna ? GO:0003735 ... Q5SHQ6 31175275
    126 6qnq:M5 (3.5) BS01 rna ? GO:0003735 ... Q5SKU1 31175275
    127 6qnq:M8 (3.5) BS01 rna ? GO:0003735 ... Q5SJE1 31175275
    128 6qnq:N8 (3.5) BS01 rna ? GO:0003735 ... P80339 31175275
    129 6qnq:O8 (3.5) BS01 rna ? GO:0000049 ... P35871 31175275
    130 6qnq:P8 (3.5) BS01 rna ? GO:0003735 ... P80340 31175275
    131 6qnq:Q8 (3.5) BS01 rna ? GO:0003735 ... Q5SKU1 31175275
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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