Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 35 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6qdw:0 (2.83) BS01 rna ? GO:0000027 ... P0A7M2 33149120
    2 6qdw:1 (2.83) BS01 rna ? GO:0000027 ... P0A7M6 33149120
    3 6qdw:2 (2.83) BS01 rna ? GO:0000027 ... P0AG51 33149120
    4 6qdw:3 (2.83) BS01 rna ? GO:0000027 ... P0A7N4 33149120
    5 6qdw:4 (2.83) BS01 rna ? GO:0000027 ... P0A7N9 33149120
    6 6qdw:6 (2.83) BS01 rna ? GO:0002181 ... P0A7P5 33149120
    7 6qdw:7 (2.83) BS01 rna ? GO:0002181 ... P0A7Q1 33149120
    8 6qdw:8 (2.83) BS01 rna ? GO:0002181 ... P0A7Q6 33149120
    9 6qdw:c (2.83) BS01 rna ? GO:0000027 ... P60422 33149120
    10 6qdw:d (2.83) BS01 rna ? GO:0000027 ... P60438 33149120
    11 6qdw:e (2.83) BS01 rna ? GO:0001070 ... P60723 33149120
    12 6qdw:e (2.83) BS02 peptide ? GO:0001070 ... P60723 33149120
    13 6qdw:f (2.83) BS01 rna ? GO:0000027 ... P62399 33149120
    14 6qdw:f (2.83) BS02 rna ? GO:0000027 ... P62399 33149120
    15 6qdw:f (2.83) BS03 rna ? GO:0000027 ... P62399 33149120
    16 6qdw:g (2.83) BS01 rna ? GO:0000027 ... P0AG55 33149120
    17 6qdw:h (2.83) BS01 rna ? GO:0002181 ... P0A7R1 33149120
    18 6qdw:j (2.83) BS01 rna ? GO:0002181 ... P0AA10 33149120
    19 6qdw:k (2.83) BS01 rna ? GO:0002181 ... P0ADY3 33149120
    20 6qdw:l (2.83) BS01 rna ? GO:0002181 ... P02413 33149120
    21 6qdw:m (2.83) BS01 rna ? GO:0000027 ... P0ADY7 33149120
    22 6qdw:m (2.83) BS02 rna ? GO:0000027 ... P0ADY7 33149120
    23 6qdw:n (2.83) BS01 rna ? GO:0000027 ... P0AG44 33149120
    24 6qdw:o (2.83) BS01 rna ? GO:0002181 ... P0C018 33149120
    25 6qdw:o (2.83) BS02 rna ? GO:0002181 ... P0C018 33149120
    26 6qdw:p (2.83) BS01 rna ? GO:0000027 ... P0A7K6 33149120
    27 6qdw:q (2.83) BS01 rna ? GO:0000027 ... P0A7L3 33149120
    28 6qdw:r (2.83) BS01 rna ? GO:0002181 ... P0AG48 33149120
    29 6qdw:s (2.83) BS01 rna ? GO:0002181 ... P61175 33149120
    30 6qdw:s (2.83) BS02 peptide ? GO:0002181 ... P61175 33149120
    31 6qdw:t (2.83) BS01 rna ? GO:0000027 ... C6EGE8 33149120
    32 6qdw:u (2.83) BS01 rna ? GO:0000027 ... P60624 33149120
    33 6qdw:w (2.83) BS01 rna ? GO:0000027 ... P68919 33149120
    34 6qdw:y (2.83) BS01 rna ? GO:0000027 ... P0A7L8 33149120
    35 6qdw:y (2.83) BS02 rna ? GO:0000027 ... P0A7L8 33149120
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218