Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 66 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6osk:A (3.6) BS01 rna ? GO:0003747 ... P0A7I0 31189921
    2 6osk:A (3.6) BS02 rna ? GO:0003747 ... P0A7I0 31189921
    3 6osk:A (3.6) BS03 rna ? GO:0003747 ... P0A7I0 31189921
    4 6osk:A (3.6) BS04 rna ? GO:0003747 ... P0A7I0 31189921
    5 6osk:B (3.6) BS01 rna ? GO:0000027 ... P60422 31189921
    6 6osk:C (3.6) BS01 rna ? GO:0000027 ... P60438 31189921
    7 6osk:D (3.6) BS01 rna ? GO:0001070 ... P60723 31189921
    8 6osk:E (3.6) BS01 rna ? GO:0000027 ... P62399 31189921
    9 6osk:E (3.6) BS02 rna ? GO:0000027 ... P62399 31189921
    10 6osk:E (3.6) BS03 rna ? GO:0000027 ... P62399 31189921
    11 6osk:F (3.6) BS01 rna ? GO:0000027 ... P0AG55 31189921
    12 6osk:G (3.6) BS01 rna ? GO:0002181 ... P0A7R1 31189921
    13 6osk:J (3.6) BS01 rna ? GO:0002181 ... P0AA10 31189921
    14 6osk:K (3.6) BS01 rna ? GO:0002181 ... P0ADY3 31189921
    15 6osk:K (3.6) BS02 rna ? GO:0002181 ... P0ADY3 31189921
    16 6osk:L (3.6) BS01 rna ? GO:0002181 ... P02413 31189921
    17 6osk:M (3.6) BS01 rna ? GO:0000027 ... P0ADY7 31189921
    18 6osk:M (3.6) BS02 rna ? GO:0000027 ... P0ADY7 31189921
    19 6osk:N (3.6) BS01 rna ? GO:0000027 ... P0AG44 31189921
    20 6osk:O (3.6) BS01 rna ? GO:0002181 ... P0C018 31189921
    21 6osk:O (3.6) BS02 rna ? GO:0002181 ... P0C018 31189921
    22 6osk:P (3.6) BS01 rna ? GO:0000027 ... P0A7K6 31189921
    23 6osk:P (3.6) BS02 rna ? GO:0000027 ... P0A7K6 31189921
    24 6osk:Q (3.6) BS01 rna ? GO:0000027 ... P0A7L3 31189921
    25 6osk:R (3.6) BS01 rna ? GO:0002181 ... P0AG48 31189921
    26 6osk:S (3.6) BS01 rna ? GO:0002181 ... P61175 31189921
    27 6osk:T (3.6) BS01 rna ? GO:0000027 ... P0ADZ0 31189921
    28 6osk:U (3.6) BS01 rna ? GO:0000027 ... P60624 31189921
    29 6osk:U (3.6) BS02 MG ? GO:0000027 ... P60624 31189921
    30 6osk:V (3.6) BS01 rna ? GO:0000027 ... P68919 31189921
    31 6osk:V (3.6) BS02 rna ? GO:0000027 ... P68919 31189921
    32 6osk:W (3.6) BS01 rna ? GO:0003735 ... P0A7L8 31189921
    33 6osk:X (3.6) BS01 rna ? GO:0000027 ... P0A7M2 31189921
    34 6osk:Y (3.6) BS01 rna ? GO:0000027 ... P0A7M6 31189921
    35 6osk:Z (3.6) BS01 rna ? GO:0000027 ... P0AG51 31189921
    36 6osk:a (3.6) BS01 rna ? GO:0002181 ... P0A7M9 31189921
    37 6osk:a (3.6) BS02 rna ? GO:0002181 ... P0A7M9 31189921
    38 6osk:b (3.6) BS01 rna ? GO:0000027 ... P0A7N4 31189921
    39 6osk:c (3.6) BS01 rna ? GO:0000027 ... P0A7N9 31189921
    40 6osk:d (3.6) BS01 rna ? GO:0002181 ... P0A7P5 31189921
    41 6osk:e (3.6) BS01 rna ? GO:0002181 ... P0A7Q1 31189921
    42 6osk:f (3.6) BS01 rna ? GO:0002181 ... P0A7Q6 31189921
    43 6osk:f (3.6) BS02 ZN ? GO:0002181 ... P0A7Q6 31189921
    44 6osk:g (3.6) BS01 rna ? GO:0000028 ... P0A7V0 31189921
    45 6osk:h (3.6) BS01 rna ? GO:0003676 ... P0A7V3 31189921
    46 6osk:i (3.6) BS01 rna ? GO:0000028 ... P0A7V8 31189921
    47 6osk:j (3.6) BS01 rna ? GO:0000028 ... P0A7W1 31189921
    48 6osk:k (3.6) BS01 rna ? GO:0003735 ... P02358 31189921
    49 6osk:l (3.6) BS01 rna ? GO:0003723 ... P02359 31189921
    50 6osk:m (3.6) BS01 rna ? GO:0000028 ... P0A7W7 31189921
    51 6osk:n (3.6) BS01 rna ? GO:0000049 ... P0A7X3 31189921
    52 6osk:n (3.6) BS02 rna ? GO:0000049 ... P0A7X3 31189921
    53 6osk:o (3.6) BS01 rna ? GO:0000049 ... P0A7R5 31189921
    54 6osk:p (3.6) BS01 rna ? GO:0002181 ... P0A7R9 31189921
    55 6osk:q (3.6) BS01 rna ? GO:0000049 ... P0A7S3 31189921
    56 6osk:r (3.6) BS01 rna ? GO:0000049 ... P0A7S9 31189921
    57 6osk:r (3.6) BS02 rna ? GO:0000049 ... P0A7S9 31189921
    58 6osk:s (3.6) BS01 rna ? GO:0000028 ... P0AG59 31189921
    59 6osk:t (3.6) BS01 rna ? GO:0000028 ... P0ADZ4 31189921
    60 6osk:t (3.6) BS02 rna ? GO:0000028 ... P0ADZ4 31189921
    61 6osk:u (3.6) BS01 rna ? GO:0000028 ... P0A7T3 31189921
    62 6osk:v (3.6) BS01 rna ? GO:0000028 ... P0AG63 31189921
    63 6osk:w (3.6) BS01 rna ? GO:0003735 ... P0A7T7 31189921
    64 6osk:x (3.6) BS01 rna ? GO:0000028 ... P0A7U3 31189921
    65 6osk:y (3.6) BS01 rna ? GO:0000028 ... P0A7U7 31189921
    66 6osk:z (3.6) BS01 rna ? GO:0000028 ... P68679 31189921
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218