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BioLiP
Download all results in tab-seperated text for 59 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6oig:A (3.8) BS01 rna ? GO:0002181 ... P0CX45 33219089
    2 6oig:B (3.8) BS01 rna ? GO:0000027 ... P14126 33219089
    3 6oig:C (3.8) BS01 rna ? GO:0002181 ... P10664 33219089
    4 6oig:C (3.8) BS02 rna ? GO:0002181 ... P10664 33219089
    5 6oig:D (3.8) BS01 rna ? GO:0000027 ... P26321 33219089
    6 6oig:D (3.8) BS02 rna ? GO:0000027 ... P26321 33219089
    7 6oig:E (3.8) BS01 rna ? GO:0000027 ... Q02326 33219089
    8 6oig:F (3.8) BS01 rna ? GO:0000463 ... P05737 33219089
    9 6oig:F (3.8) BS02 rna ? GO:0000463 ... P05737 33219089
    10 6oig:G (3.8) BS01 rna ? GO:0000470 ... P17076 33219089
    11 6oig:G (3.8) BS02 rna ? GO:0000470 ... P17076 33219089
    12 6oig:H (3.8) BS01 rna ? GO:0002181 ... P05738 33219089
    13 6oig:I (3.8) BS01 rna ? GO:0000027 ... P41805 33219089
    14 6oig:I (3.8) BS02 rna ? GO:0000027 ... P41805 33219089
    15 6oig:J (3.8) BS01 rna ? GO:0000027 ... Q3E757 33219089
    16 6oig:J (3.8) BS02 rna ? GO:0000027 ... Q3E757 33219089
    17 6oig:L (3.8) BS01 rna ? GO:0002181 ... Q12690 33219089
    18 6oig:L (3.8) BS02 rna ? GO:0002181 ... Q12690 33219089
    19 6oig:M (3.8) BS01 rna ? GO:0000027 ... P36105 33219089
    20 6oig:N (3.8) BS01 rna ? GO:0002181 ... P05748 33219089
    21 6oig:N (3.8) BS02 rna ? GO:0002181 ... P05748 33219089
    22 6oig:O (3.8) BS01 rna ? GO:0000470 ... P26784 33219089
    23 6oig:P (3.8) BS01 rna ? GO:0000448 ... P05740 33219089
    24 6oig:P (3.8) BS02 rna ? GO:0000448 ... P05740 33219089
    25 6oig:Q (3.8) BS01 rna ? GO:0002181 ... P0CX49 33219089
    26 6oig:R (3.8) BS01 rna ? GO:0002181 ... P0CX82 33219089
    27 6oig:S (3.8) BS01 rna ? GO:0002181 ... P0CX23 33219089
    28 6oig:S (3.8) BS02 rna ? GO:0002181 ... P0CX23 33219089
    29 6oig:T (3.8) BS01 rna ? GO:0002181 ... Q02753 33219089
    30 6oig:T (3.8) BS02 rna ? GO:0002181 ... Q02753 33219089
    31 6oig:U (3.8) BS01 rna ? GO:0003735 ... P05749 33219089
    32 6oig:V (3.8) BS01 rna ? GO:0002181 ... P0CX41 33219089
    33 6oig:W (3.8) BS01 rna ? N/A P04449 33219089
    34 6oig:X (3.8) BS01 rna ? GO:0003735 ... P04456 33219089
    35 6oig:X (3.8) BS02 rna ? GO:0003735 ... P04456 33219089
    36 6oig:Y (3.8) BS01 rna ? GO:0002181 ... P05743 33219089
    37 6oig:Y (3.8) BS02 rna ? GO:0002181 ... P05743 33219089
    38 6oig:Z (3.8) BS01 rna ? GO:0002181 ... P0C2H6 33219089
    39 6oig:a (3.8) BS01 rna ? GO:0002181 ... P02406 33219089
    40 6oig:b (3.8) BS01 rna ? GO:0002181 ... P05747 33219089
    41 6oig:c (3.8) BS01 rna ? GO:0002181 ... P14120 33219089
    42 6oig:d (3.8) BS01 rna ? GO:0002181 ... P0C2H8 33219089
    43 6oig:e (3.8) BS01 rna ? GO:0002181 ... P38061 33219089
    44 6oig:f (3.8) BS01 rna ? GO:0000027 ... P05744 33219089
    45 6oig:g (3.8) BS01 rna ? GO:0002181 ... P87262 33219089
    46 6oig:h (3.8) BS01 rna ? GO:0000463 ... P0CX84 33219089
    47 6oig:h (3.8) BS02 rna ? GO:0000463 ... P0CX84 33219089
    48 6oig:i (3.8) BS01 rna ? GO:0002181 ... P05745 33219089
    49 6oig:j (3.8) BS01 rna ? GO:0000448 ... P49166 33219089
    50 6oig:j (3.8) BS02 rna ? GO:0000448 ... P49166 33219089
    51 6oig:k (3.8) BS01 rna ? GO:0002181 ... P49167 33219089
    52 6oig:l (3.8) BS01 rna ? GO:0002181 ... P04650 33219089
    53 6oig:l (3.8) BS02 rna ? GO:0002181 ... P04650 33219089
    54 6oig:m (3.8) BS01 rna ? GO:0003735 ... P0CH08 33219089
    55 6oig:o (3.8) BS01 rna ? GO:0002181 ... P0CX27 33219089
    56 6oig:p (3.8) BS01 rna ? GO:0002181 ... P0CX25 33219089
    57 6oig:q (3.8) BS01 rna ? N/A P05317 33219089
    58 6oig:s (3.8) BS01 rna ? GO:0000027 ... P0CX53 33219089
    59 6oig:z (3.8) BS01 rna ? GO:0000055 ... P0CX43 33219089
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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