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BioLiP
Download all results in tab-seperated text for 28 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6ir9:A (3.8) BS01 rna 2.7.7.6 GO:0000428 ... C4R4Y0 30733384
    2 6ir9:A (3.8) BS02 dna 2.7.7.6 GO:0000428 ... C4R4Y0 30733384
    3 6ir9:A (3.8) BS03 ZN 2.7.7.6 GO:0000428 ... C4R4Y0 30733384
    4 6ir9:A (3.8) BS04 ZN 2.7.7.6 GO:0000428 ... C4R4Y0 30733384
    5 6ir9:A (3.8) BS05 MG 2.7.7.6 GO:0000428 ... C4R4Y0 30733384
    6 6ir9:B (3.8) BS01 rna 2.7.7.6 GO:0000428 ... C4QZQ7 30733384
    7 6ir9:B (3.8) BS02 dna 2.7.7.6 GO:0000428 ... C4QZQ7 30733384
    8 6ir9:B (3.8) BS03 dna 2.7.7.6 GO:0000428 ... C4QZQ7 30733384
    9 6ir9:B (3.8) BS04 ZN 2.7.7.6 GO:0000428 ... C4QZQ7 30733384
    10 6ir9:I (3.8) BS01 ZN ? GO:0000428 ... F2QPE6 30733384
    11 6ir9:I (3.8) BS02 ZN ? GO:0000428 ... F2QPE6 30733384
    12 6ir9:J (3.8) BS01 ZN ? GO:0000428 ... C4R009 30733384
    13 6ir9:L (3.8) BS01 ZN ? GO:0001054 ... F2QMI1 30733384
    14 6ir9:M (3.8) BS01 ZN ? GO:0000993 ... C4QZ45 30733384
    15 6ir9:V (3.8) BS01 ZN ? GO:0000775 ... C4R0E6 30733384
    16 6ir9:W (3.8) BS01 dna ? GO:0003711 ... C4R370 30733384
    17 6ir9:W (3.8) BS02 dna ? GO:0003711 ... C4R370 30733384
    18 6ir9:a (3.8) BS01 dna ? GO:0000775 ... P84243 30733384
    19 6ir9:a (3.8) BS02 dna ? GO:0000775 ... P84243 30733384
    20 6ir9:b (3.8) BS01 dna ? GO:0000781 ... P62805 30733384
    21 6ir9:b (3.8) BS02 dna ? GO:0000781 ... P62805 30733384
    22 6ir9:c (3.8) BS01 dna ? GO:0000786 ... P04908 30733384
    23 6ir9:c (3.8) BS02 dna ? GO:0000786 ... P04908 30733384
    24 6ir9:d (3.8) BS01 dna ? GO:0000786 ... P06899 30733384
    25 6ir9:d (3.8) BS02 dna ? GO:0000786 ... P06899 30733384
    26 6ir9:e (3.8) BS01 dna ? GO:0000775 ... P84243 30733384
    27 6ir9:e (3.8) BS02 dna ? GO:0000775 ... P84243 30733384
    28 6ir9:f (3.8) BS01 dna ? GO:0000781 ... P62805 30733384
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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