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BioLiP
Download all results in tab-seperated text for 111 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6gz5:AA (3.5) BS01 rna N/A GO:0003735 ... N/A 30517857
    2 6gz5:AA (3.5) BS02 rna N/A GO:0003735 ... N/A 30517857
    3 6gz5:AB (3.5) BS01 rna N/A GO:0003735 ... N/A 30517857
    4 6gz5:AC (3.5) BS01 rna N/A GO:0003735 ... N/A 30517857
    5 6gz5:AC (3.5) BS02 rna N/A GO:0003735 ... N/A 30517857
    6 6gz5:AD (3.5) BS01 rna N/A GO:0003735 ... N/A 30517857
    7 6gz5:AD (3.5) BS02 rna N/A GO:0003735 ... N/A 30517857
    8 6gz5:AE (3.5) BS01 rna N/A GO:0003735 ... N/A 30517857
    9 6gz5:AF (3.5) BS01 rna N/A GO:0000463 ... N/A 30517857
    10 6gz5:AF (3.5) BS02 rna N/A GO:0000463 ... N/A 30517857
    11 6gz5:AG (3.5) BS01 rna N/A GO:0042254 ... N/A 30517857
    12 6gz5:AG (3.5) BS02 rna N/A GO:0042254 ... N/A 30517857
    13 6gz5:AH (3.5) BS01 rna N/A GO:0003735 ... N/A 30517857
    14 6gz5:AI (3.5) BS01 rna N/A GO:0003735 ... N/A 30517857
    15 6gz5:AI (3.5) BS02 rna N/A GO:0003735 ... N/A 30517857
    16 6gz5:AI (3.5) BS03 rna N/A GO:0003735 ... N/A 30517857
    17 6gz5:AJ (3.5) BS01 rna N/A GO:0003735 ... N/A 30517857
    18 6gz5:AJ (3.5) BS02 rna N/A GO:0003735 ... N/A 30517857
    19 6gz5:AJ (3.5) BS03 rna N/A GO:0003735 ... N/A 30517857
    20 6gz5:AK (3.5) BS01 rna N/A N/A N/A 30517857
    21 6gz5:AL (3.5) BS01 rna N/A GO:0003735 ... N/A 30517857
    22 6gz5:AL (3.5) BS02 rna N/A GO:0003735 ... N/A 30517857
    23 6gz5:AM (3.5) BS01 rna N/A GO:0003723 ... N/A 30517857
    24 6gz5:AN (3.5) BS01 rna N/A GO:0003735 ... N/A 30517857
    25 6gz5:AN (3.5) BS02 rna N/A GO:0003735 ... N/A 30517857
    26 6gz5:AO (3.5) BS01 rna N/A GO:0003735 ... N/A 30517857
    27 6gz5:AP (3.5) BS01 rna N/A GO:0003735 ... N/A 30517857
    28 6gz5:AP (3.5) BS02 rna N/A GO:0003735 ... N/A 30517857
    29 6gz5:AQ (3.5) BS01 rna N/A GO:0003735 ... N/A 30517857
    30 6gz5:AR (3.5) BS01 rna N/A GO:0003723 ... N/A 30517857
    31 6gz5:AR (3.5) BS02 rna N/A GO:0003723 ... N/A 30517857
    32 6gz5:AS (3.5) BS01 rna N/A GO:0003735 ... N/A 30517857
    33 6gz5:AS (3.5) BS02 rna N/A GO:0003735 ... N/A 30517857
    34 6gz5:AT (3.5) BS01 rna N/A GO:0003735 ... N/A 30517857
    35 6gz5:AT (3.5) BS02 rna N/A GO:0003735 ... N/A 30517857
    36 6gz5:AU (3.5) BS01 rna N/A GO:0003735 ... N/A 30517857
    37 6gz5:AV (3.5) BS01 rna N/A GO:0003735 ... N/A 30517857
    38 6gz5:AW (3.5) BS01 rna N/A N/A N/A 30517857
    39 6gz5:AW (3.5) BS02 rna N/A N/A N/A 30517857
    40 6gz5:AX (3.5) BS01 rna N/A GO:0003735 ... N/A 30517857
    41 6gz5:AX (3.5) BS02 rna N/A GO:0003735 ... N/A 30517857
    42 6gz5:AY (3.5) BS01 rna N/A GO:0003723 ... N/A 30517857
    43 6gz5:AY (3.5) BS02 rna N/A GO:0003723 ... N/A 30517857
    44 6gz5:AZ (3.5) BS01 rna N/A GO:0003735 ... N/A 30517857
    45 6gz5:Aa (3.5) BS01 rna N/A GO:0003735 ... N/A 30517857
    46 6gz5:Ab (3.5) BS01 rna N/A GO:0003735 ... N/A 30517857
    47 6gz5:Ac (3.5) BS01 rna N/A GO:0003723 ... N/A 30517857
    48 6gz5:Ad (3.5) BS01 rna N/A GO:0003735 ... N/A 30517857
    49 6gz5:Ae (3.5) BS01 rna N/A GO:0003735 ... N/A 30517857
    50 6gz5:Af (3.5) BS01 rna N/A GO:0003735 ... N/A 30517857
    51 6gz5:Ag (3.5) BS01 rna N/A GO:0003735 ... N/A 30517857
    52 6gz5:Ah (3.5) BS01 rna N/A GO:0000463 ... N/A 30517857
    53 6gz5:Ah (3.5) BS02 rna N/A GO:0000463 ... N/A 30517857
    54 6gz5:Ai (3.5) BS01 rna N/A GO:0003735 ... N/A 30517857
    55 6gz5:Aj (3.5) BS01 rna N/A GO:0003735 ... N/A 30517857
    56 6gz5:Aj (3.5) BS02 rna N/A GO:0003735 ... N/A 30517857
    57 6gz5:Aj (3.5) BS03 ZN N/A GO:0003735 ... N/A 30517857
    58 6gz5:Ak (3.5) BS01 rna N/A GO:0003735 ... N/A 30517857
    59 6gz5:Al (3.5) BS01 rna N/A GO:0003735 ... N/A 30517857
    60 6gz5:Al (3.5) BS02 rna N/A GO:0003735 ... N/A 30517857
    61 6gz5:Am (3.5) BS01 rna N/A GO:0003735 ... N/A 30517857
    62 6gz5:Ao (3.5) BS01 rna N/A GO:0003735 ... N/A 30517857
    63 6gz5:Ao (3.5) BS02 rna N/A GO:0003735 ... N/A 30517857
    64 6gz5:Ao (3.5) BS03 rna N/A GO:0003735 ... N/A 30517857
    65 6gz5:Ao (3.5) BS04 ZN N/A GO:0003735 ... N/A 30517857
    66 6gz5:Ap (3.5) BS01 rna N/A GO:0003735 ... N/A 30517857
    67 6gz5:Ap (3.5) BS02 ZN N/A GO:0003735 ... N/A 30517857
    68 6gz5:Aq (3.5) BS01 rna N/A GO:0003735 ... N/A 30517857
    69 6gz5:At (3.5) BS01 rna N/A GO:0003735 ... N/A 30517857
    70 6gz5:Au (3.5) BS01 rna N/A GO:0003723 ... N/A 30517857
    71 6gz5:BA (3.5) BS01 rna N/A GO:0003735 ... N/A 30517857
    72 6gz5:BB (3.5) BS01 rna N/A GO:0003735 ... N/A 30517857
    73 6gz5:BC (3.5) BS01 rna N/A GO:0003723 ... N/A 30517857
    74 6gz5:BD (3.5) BS01 rna N/A GO:0003723 ... N/A 30517857
    75 6gz5:BE (3.5) BS01 rna N/A GO:0003723 ... N/A 30517857
    76 6gz5:BF (3.5) BS01 rna N/A GO:0003723 ... N/A 30517857
    77 6gz5:BF (3.5) BS02 rna N/A GO:0003723 ... N/A 30517857
    78 6gz5:BG (3.5) BS01 rna N/A GO:0003735 ... N/A 30517857
    79 6gz5:BH (3.5) BS01 rna N/A GO:0003735 ... N/A 30517857
    80 6gz5:BI (3.5) BS01 rna N/A GO:0003735 ... N/A 30517857
    81 6gz5:BI (3.5) BS02 rna N/A GO:0003735 ... N/A 30517857
    82 6gz5:BJ (3.5) BS01 rna N/A GO:0003723 ... N/A 30517857
    83 6gz5:BK (3.5) BS01 rna N/A N/A N/A 30517857
    84 6gz5:BL (3.5) BS01 rna N/A GO:0003735 ... N/A 30517857
    85 6gz5:BM (3.5) BS01 rna N/A GO:0003735 ... N/A 30517857
    86 6gz5:BN (3.5) BS01 rna N/A GO:0003735 ... N/A 30517857
    87 6gz5:BN (3.5) BS02 rna N/A GO:0003735 ... N/A 30517857
    88 6gz5:BO (3.5) BS01 rna N/A GO:0003735 ... N/A 30517857
    89 6gz5:BP (3.5) BS01 rna N/A GO:0003723 ... N/A 30517857
    90 6gz5:BQ (3.5) BS01 rna N/A GO:0003735 ... N/A 30517857
    91 6gz5:BR (3.5) BS01 rna N/A GO:0003735 ... N/A 30517857
    92 6gz5:BS (3.5) BS01 rna N/A GO:0003676 ... N/A 30517857
    93 6gz5:BS (3.5) BS02 rna N/A GO:0003676 ... N/A 30517857
    94 6gz5:BT (3.5) BS01 rna N/A GO:0003735 ... N/A 30517857
    95 6gz5:BU (3.5) BS01 rna N/A GO:0003723 ... N/A 30517857
    96 6gz5:BW (3.5) BS01 rna N/A GO:0003735 ... N/A 30517857
    97 6gz5:BX (3.5) BS01 rna N/A GO:0003735 ... N/A 30517857
    98 6gz5:BY (3.5) BS01 rna N/A GO:0003735 ... N/A 30517857
    99 6gz5:BZ (3.5) BS01 rna N/A N/A N/A 30517857
    100 6gz5:Ba (3.5) BS01 rna N/A GO:0003735 ... N/A 30517857
    101 6gz5:Ba (3.5) BS02 ZN N/A GO:0003735 ... N/A 30517857
    102 6gz5:Bb (3.5) BS01 rna N/A GO:0003735 ... N/A 30517857
    103 6gz5:Bc (3.5) BS01 rna N/A GO:0003735 ... N/A 30517857
    104 6gz5:Bd (3.5) BS01 rna N/A GO:0003735 ... N/A 30517857
    105 6gz5:Bd (3.5) BS02 ZN N/A GO:0003735 ... N/A 30517857
    106 6gz5:Be (3.5) BS01 rna N/A GO:0003735 ... N/A 30517857
    107 6gz5:Bf (3.5) BS01 rna N/A GO:0003735 ... N/A 30517857
    108 6gz5:Bg (3.5) BS01 rna N/A GO:0043022 ... N/A 30517857
    109 6gz5:Ct (3.5) BS01 rna N/A GO:0003924 ... N/A 30517857
    110 6gz5:Ct (3.5) BS02 rna N/A GO:0003924 ... N/A 30517857
    111 6gz5:Ct (3.5) BS03 GNP N/A GO:0003924 ... N/A 30517857
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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