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BioLiP
Download all results in tab-seperated text for 49 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6em1:3 (3.6) BS01 rna ? GO:0000460 ... P10962 29245012
    2 6em1:4 (3.6) BS01 rna ? GO:0003674 ... P35178 29245012
    3 6em1:5 (3.6) BS01 rna ? GO:0003674 ... P53136 29245012
    4 6em1:A (3.6) BS01 rna ? GO:0000027 ... Q08235 29245012
    5 6em1:B (3.6) BS01 rna ? GO:0000027 ... P14126 29245012
    6 6em1:C (3.6) BS01 rna ? GO:0002181 ... P10664 29245012
    7 6em1:C (3.6) BS02 rna ? GO:0002181 ... P10664 29245012
    8 6em1:E (3.6) BS01 rna ? GO:0000027 ... Q02326 29245012
    9 6em1:F (3.6) BS01 rna ? GO:0000463 ... P05737 29245012
    10 6em1:G (3.6) BS01 rna ? GO:0000470 ... P17076 29245012
    11 6em1:G (3.6) BS02 rna ? GO:0000470 ... P17076 29245012
    12 6em1:H (3.6) BS01 rna ? GO:0002181 ... P05738 29245012
    13 6em1:K (3.6) BS01 rna ? GO:0000462 ... P38779 29245012
    14 6em1:L (3.6) BS01 rna ? GO:0002181 ... Q12690 29245012
    15 6em1:M (3.6) BS01 rna ? GO:0000027 ... P36105 29245012
    16 6em1:N (3.6) BS01 rna ? GO:0002181 ... P05748 29245012
    17 6em1:N (3.6) BS02 rna ? GO:0002181 ... P05748 29245012
    18 6em1:O (3.6) BS01 rna ? GO:0000470 ... P26784 29245012
    19 6em1:P (3.6) BS01 rna ? GO:0000448 ... P05740 29245012
    20 6em1:P (3.6) BS02 rna ? GO:0000448 ... P05740 29245012
    21 6em1:Q (3.6) BS01 rna ? GO:0002181 ... P0CX49 29245012
    22 6em1:S (3.6) BS01 rna ? GO:0002181 ... P0CX23 29245012
    23 6em1:V (3.6) BS01 rna ? GO:0002181 ... P0CX41 29245012
    24 6em1:W (3.6) BS01 rna ? GO:0000027 ... P33201 29245012
    25 6em1:Y (3.6) BS01 rna ? GO:0002181 ... P05743 29245012
    26 6em1:Y (3.6) BS02 rna ? GO:0002181 ... P05743 29245012
    27 6em1:b (3.6) BS01 rna ? GO:0000054 ... Q02892 29245012
    28 6em1:e (3.6) BS01 rna ? GO:0002181 ... P38061 29245012
    29 6em1:f (3.6) BS01 rna ? GO:0000027 ... P05744 29245012
    30 6em1:h (3.6) BS01 rna ? GO:0000463 ... P0CX84 29245012
    31 6em1:h (3.6) BS02 rna ? GO:0000463 ... P0CX84 29245012
    32 6em1:i (3.6) BS01 rna ? GO:0002181 ... O14455 29245012
    33 6em1:j (3.6) BS01 rna ? GO:0000448 ... P49166 29245012
    34 6em1:j (3.6) BS02 rna ? GO:0000448 ... P49166 29245012
    35 6em1:j (3.6) BS03 ZN ? GO:0000448 ... P49166 29245012
    36 6em1:m (3.6) BS01 rna ? GO:0000463 ... Q04660 29245012
    37 6em1:m (3.6) BS02 rna ? GO:0000463 ... Q04660 29245012
    38 6em1:n (3.6) BS01 rna ? GO:0000462 ... P53261 29245012
    39 6em1:n (3.6) BS02 rna ? GO:0000462 ... P53261 29245012
    40 6em1:o (3.6) BS01 rna ? GO:0000463 ... P53927 29245012
    41 6em1:r (3.6) BS01 rna ? GO:0000460 ... P40078 29245012
    42 6em1:t (3.6) BS01 rna ? GO:0000463 ... P40693 29245012
    43 6em1:u (3.6) BS01 rna ? GO:0001671 ... Q07915 29245012
    44 6em1:u (3.6) BS02 ZN ? GO:0001671 ... Q07915 29245012
    45 6em1:v (3.6) BS01 rna ? GO:0003674 ... P40007 29245012
    46 6em1:v (3.6) BS02 rna ? GO:0003674 ... P40007 29245012
    47 6em1:x (3.6) BS01 rna ? GO:0000055 ... P38805 29245012
    48 6em1:y (3.6) BS01 rna ? GO:0000054 ... Q12522 29245012
    49 6em1:z (3.6) BS01 rna ? GO:0003674 ... P38202 29245012
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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