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BioLiP
Download all results in tab-seperated text for 61 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6dzi:4 (3.46) BS01 rna ? GO:0003735 ... A0QSP9 30038002
    2 6dzi:5 (3.46) BS01 rna ? GO:0003735 ... A0QSE0 30038002
    3 6dzi:6 (3.46) BS01 rna ? GO:0003723 ... A0QSD5 30038002
    4 6dzi:7 (3.46) BS01 rna ? GO:0003723 ... A0R102 30038002
    5 6dzi:8 (3.46) BS01 rna ? GO:0003735 ... A0QVB8 30038002
    6 6dzi:9 (3.46) BS01 rna ? GO:0003735 ... A0R550 30038002
    7 6dzi:C (3.46) BS01 rna ? GO:0002181 ... A0QSD4 30038002
    8 6dzi:C (3.46) BS02 rna ? GO:0002181 ... A0QSD4 30038002
    9 6dzi:D (3.46) BS01 rna ? GO:0003735 ... A0QSD1 30038002
    10 6dzi:E (3.46) BS01 rna ? GO:0003735 ... A0QSD2 30038002
    11 6dzi:F (3.46) BS01 rna ? GO:0000049 ... A0QSG1 30038002
    12 6dzi:F (3.46) BS02 rna ? GO:0000049 ... A0QSG1 30038002
    13 6dzi:G (3.46) BS01 rna ? GO:0002181 ... A0QSG4 30038002
    14 6dzi:H (3.46) BS01 rna ? GO:0003735 ... A0R7F6 30038002
    15 6dzi:I (3.46) BS01 rna ? GO:0003735 ... A0QS62 30038002
    16 6dzi:J (3.46) BS01 rna ? GO:0003735 ... A0QS45 30038002
    17 6dzi:K (3.46) BS01 rna ? GO:0003729 ... A0QSP8 30038002
    18 6dzi:L (3.46) BS01 rna ? GO:0003735 ... A0QSF9 30038002
    19 6dzi:L (3.46) BS02 rna ? GO:0003735 ... A0QSF9 30038002
    20 6dzi:M (3.46) BS01 rna ? GO:0003735 ... I7G436 30038002
    21 6dzi:N (3.46) BS01 rna ? GO:0000049 ... A0QSD8 30038002
    22 6dzi:O (3.46) BS01 rna ? GO:0003735 ... A0QSL9 30038002
    23 6dzi:P (3.46) BS01 rna ? GO:0003735 ... I7FGD9 30038002
    24 6dzi:P (3.46) BS02 rna ? GO:0003735 ... I7FGD9 30038002
    25 6dzi:Q (3.46) BS01 rna ? GO:0003735 ... A0QV42 30038002
    26 6dzi:Q (3.46) BS02 rna ? GO:0003735 ... A0QV42 30038002
    27 6dzi:R (3.46) BS01 rna ? GO:0000027 ... A0QYU6 30038002
    28 6dzi:S (3.46) BS01 rna ? GO:0003723 ... A0R151 30038002
    29 6dzi:T (3.46) BS01 rna ? GO:0003735 ... A0QSD6 30038002
    30 6dzi:U (3.46) BS01 rna ? GO:0000027 ... A0QSD3 30038002
    31 6dzi:V (3.46) BS01 rna ? GO:0003723 ... A0QSG0 30038002
    32 6dzi:W (3.46) BS01 rna ? GO:0003735 ... A0R3D2 30038002
    33 6dzi:W (3.46) BS02 rna ? GO:0003735 ... A0R3D2 30038002
    34 6dzi:X (3.46) BS01 rna ? GO:0003735 ... A0R150 30038002
    35 6dzi:X (3.46) BS02 rna ? GO:0003735 ... A0R150 30038002
    36 6dzi:Y (3.46) BS01 rna ? GO:0044238 ... A0QTK6 30038002
    37 6dzi:Z (3.46) BS01 rna ? GO:0003735 ... A0QSD9 30038002
    38 6dzi:a (3.46) BS01 rna ? GO:0003735 ... A0QSG7 30038002
    39 6dzi:b (3.46) BS01 rna ? GO:0003735 ... A0R3I9 30038002
    40 6dzi:c (3.46) BS01 rna ? GO:0003735 ... A0R551 30038002
    41 6dzi:d (3.46) BS01 rna ? GO:0003735 ... A0R7K0 30038002
    42 6dzi:e (3.46) BS01 rna ? GO:0003735 ... A0QYU7 30038002
    43 6dzi:f (3.46) BS01 rna ? GO:0003735 ... A0QSL4 30038002
    44 6dzi:g (3.46) BS01 rna ? GO:0003735 ... A0R554 30038002
    45 6dzi:j (3.46) BS01 rna N/A N/A N/A 30038002
    46 6dzi:j (3.46) BS02 rna N/A N/A N/A 30038002
    47 6dzi:k (3.46) BS01 rna ? GO:0003676 ... A0QSD7 30038002
    48 6dzi:l (3.46) BS01 rna ? GO:0003723 ... A0QSL7 30038002
    49 6dzi:m (3.46) BS01 rna ? GO:0003723 ... A0QSG6 30038002
    50 6dzi:n (3.46) BS01 rna N/A GO:0003735 ... N/A 30038002
    51 6dzi:p (3.46) BS01 rna ? GO:0000028 ... A0QS97 30038002
    52 6dzi:q (3.46) BS01 rna ? GO:0003735 ... A0QSG3 30038002
    53 6dzi:r (3.46) BS01 rna ? GO:0003735 ... A0R549 30038002
    54 6dzi:s (3.46) BS01 rna ? GO:0000049 ... A0QSD0 30038002
    55 6dzi:t (3.46) BS01 rna ? GO:0003735 ... A0QSL6 30038002
    56 6dzi:u (3.46) BS01 rna ? GO:0000049 ... A0QS96 30038002
    57 6dzi:v (3.46) BS01 rna ? GO:0000049 ... A0QSL5 30038002
    58 6dzi:x (3.46) BS01 rna ? GO:0003735 ... A0QVQ3 30038002
    59 6dzi:x (3.46) BS02 rna ? GO:0003735 ... A0QVQ3 30038002
    60 6dzi:y (3.46) BS01 rna N/A GO:0003735 ... N/A 30038002
    61 6dzi:z (3.46) BS01 rna ? GO:0003735 ... A0QV37 30038002
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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