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BioLiP
Download all results in tab-seperated text for 129 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6by1:AB (3.94) BS01 rna ? GO:0000028 ... P0A7V0 30552154
    2 6by1:AC (3.94) BS01 rna ? GO:0003676 ... P0A7V3 30552154
    3 6by1:AC (3.94) BS02 rna ? GO:0003676 ... P0A7V3 30552154
    4 6by1:AD (3.94) BS01 rna ? GO:0000028 ... P0A7V8 30552154
    5 6by1:AE (3.94) BS01 rna ? GO:0000028 ... P0A7W1 30552154
    6 6by1:AF (3.94) BS01 rna ? GO:0003735 ... P02358 30552154
    7 6by1:AG (3.94) BS01 rna ? GO:0000028 ... P02359 30552154
    8 6by1:AG (3.94) BS02 rna ? GO:0000028 ... P02359 30552154
    9 6by1:AH (3.94) BS01 rna ? GO:0000028 ... P0A7W7 30552154
    10 6by1:AI (3.94) BS01 rna ? GO:0000049 ... P0A7X3 30552154
    11 6by1:AJ (3.94) BS01 rna ? GO:0000049 ... P0A7R5 30552154
    12 6by1:AK (3.94) BS01 rna ? GO:0002181 ... P0A7R9 30552154
    13 6by1:AL (3.94) BS01 rna ? GO:0000049 ... P0A7S3 30552154
    14 6by1:AM (3.94) BS01 rna ? GO:0000049 ... P0A7S9 30552154
    15 6by1:AM (3.94) BS02 rna ? GO:0000049 ... P0A7S9 30552154
    16 6by1:AN (3.94) BS01 rna ? GO:0000028 ... P0AG59 30552154
    17 6by1:AN (3.94) BS02 MG ? GO:0000028 ... P0AG59 30552154
    18 6by1:AO (3.94) BS01 rna ? GO:0000028 ... P0ADZ4 30552154
    19 6by1:AO (3.94) BS02 rna ? GO:0000028 ... P0ADZ4 30552154
    20 6by1:AP (3.94) BS01 rna ? GO:0000028 ... P0A7T3 30552154
    21 6by1:AQ (3.94) BS01 rna ? GO:0000028 ... P0AG63 30552154
    22 6by1:AR (3.94) BS01 rna ? GO:0003735 ... P0A7T7 30552154
    23 6by1:AS (3.94) BS01 rna ? GO:0003723 ... P0A7U3 30552154
    24 6by1:AT (3.94) BS01 rna ? GO:0000028 ... P0A7U7 30552154
    25 6by1:BB (3.94) BS01 rna ? GO:0000028 ... P0A7V0 30552154
    26 6by1:BB (3.94) BS02 rna ? GO:0000028 ... P0A7V0 30552154
    27 6by1:BC (3.94) BS01 rna ? GO:0003676 ... P0A7V3 30552154
    28 6by1:BC (3.94) BS02 rna ? GO:0003676 ... P0A7V3 30552154
    29 6by1:BD (3.94) BS01 rna ? GO:0000028 ... P0A7V8 30552154
    30 6by1:BE (3.94) BS01 rna ? GO:0000028 ... P0A7W1 30552154
    31 6by1:BE (3.94) BS02 rna ? GO:0000028 ... P0A7W1 30552154
    32 6by1:BF (3.94) BS01 rna ? GO:0003735 ... P02358 30552154
    33 6by1:BG (3.94) BS01 rna ? GO:0000028 ... P02359 30552154
    34 6by1:BH (3.94) BS01 rna ? GO:0000028 ... P0A7W7 30552154
    35 6by1:BI (3.94) BS01 rna ? GO:0000049 ... P0A7X3 30552154
    36 6by1:BI (3.94) BS02 rna ? GO:0000049 ... P0A7X3 30552154
    37 6by1:BJ (3.94) BS01 rna ? GO:0000049 ... P0A7R5 30552154
    38 6by1:BK (3.94) BS01 rna ? GO:0002181 ... P0A7R9 30552154
    39 6by1:BL (3.94) BS01 rna ? GO:0000049 ... P0A7S3 30552154
    40 6by1:BM (3.94) BS01 rna ? GO:0000049 ... P0A7S9 30552154
    41 6by1:BN (3.94) BS01 rna ? GO:0000028 ... P0AG59 30552154
    42 6by1:BO (3.94) BS01 rna ? GO:0000028 ... P0ADZ4 30552154
    43 6by1:BO (3.94) BS02 rna ? GO:0000028 ... P0ADZ4 30552154
    44 6by1:BP (3.94) BS01 rna ? GO:0000028 ... P0A7T3 30552154
    45 6by1:BQ (3.94) BS01 rna ? GO:0000028 ... P0AG63 30552154
    46 6by1:BR (3.94) BS01 rna ? GO:0003735 ... P0A7T7 30552154
    47 6by1:BS (3.94) BS01 rna ? GO:0003723 ... P0A7U3 30552154
    48 6by1:BT (3.94) BS01 rna ? GO:0000028 ... P0A7U7 30552154
    49 6by1:C0 (3.94) BS01 ZN ? GO:0003735 ... P0A7M9 30552154
    50 6by1:C1 (3.94) BS01 rna ? GO:0000027 ... P0A7N4 30552154
    51 6by1:C2 (3.94) BS01 rna ? GO:0000027 ... P0A7N9 30552154
    52 6by1:C3 (3.94) BS01 rna ? GO:0002181 ... P0A7P5 30552154
    53 6by1:C4 (3.94) BS01 rna ? GO:0002181 ... P0A7Q1 30552154
    54 6by1:C4 (3.94) BS02 MG ? GO:0002181 ... P0A7Q1 30552154
    55 6by1:C5 (3.94) BS01 rna ? GO:0003735 ... P0A7J3 30552154
    56 6by1:C6 (3.94) BS01 rna ? GO:0002181 ... P0A7Q6 30552154
    57 6by1:C6 (3.94) BS02 ZN ? GO:0002181 ... P0A7Q6 30552154
    58 6by1:CC (3.94) BS01 rna ? GO:0000027 ... P60422 30552154
    59 6by1:CD (3.94) BS01 rna ? GO:0000027 ... P60438 30552154
    60 6by1:CE (3.94) BS01 rna ? GO:0001070 ... P60723 30552154
    61 6by1:CF (3.94) BS01 rna ? GO:0000027 ... P62399 30552154
    62 6by1:CF (3.94) BS02 rna ? GO:0000027 ... P62399 30552154
    63 6by1:CF (3.94) BS03 rna ? GO:0000027 ... P62399 30552154
    64 6by1:CG (3.94) BS01 rna ? GO:0000027 ... P0AG55 30552154
    65 6by1:CH (3.94) BS01 rna ? GO:0002181 ... P0A7R1 30552154
    66 6by1:CH (3.94) BS02 rna ? GO:0002181 ... P0A7R1 30552154
    67 6by1:CI (3.94) BS01 rna ? GO:0003735 ... P0A7J7 30552154
    68 6by1:CJ (3.94) BS01 rna ? GO:0002181 ... P0AA10 30552154
    69 6by1:CK (3.94) BS01 rna ? GO:0002181 ... P0ADY3 30552154
    70 6by1:CK (3.94) BS02 rna ? GO:0002181 ... P0ADY3 30552154
    71 6by1:CL (3.94) BS01 rna ? GO:0002181 ... P02413 30552154
    72 6by1:CM (3.94) BS01 rna ? GO:0000027 ... P0ADY7 30552154
    73 6by1:CM (3.94) BS02 rna ? GO:0000027 ... P0ADY7 30552154
    74 6by1:CM (3.94) BS03 rna ? GO:0000027 ... P0ADY7 30552154
    75 6by1:CN (3.94) BS01 rna ? GO:0000027 ... P0AG44 30552154
    76 6by1:CO (3.94) BS01 rna ? GO:0002181 ... P0C018 30552154
    77 6by1:CO (3.94) BS02 rna ? GO:0002181 ... P0C018 30552154
    78 6by1:CP (3.94) BS01 rna ? GO:0000027 ... P0A7K6 30552154
    79 6by1:CP (3.94) BS02 rna ? GO:0000027 ... P0A7K6 30552154
    80 6by1:CQ (3.94) BS01 rna ? GO:0000027 ... P0A7L3 30552154
    81 6by1:CR (3.94) BS01 rna ? GO:0002181 ... P0AG48 30552154
    82 6by1:CS (3.94) BS01 rna ? GO:0002181 ... P61175 30552154
    83 6by1:CT (3.94) BS01 rna ? GO:0000027 ... P0ADZ0 30552154
    84 6by1:CU (3.94) BS01 rna ? GO:0000027 ... P60624 30552154
    85 6by1:CV (3.94) BS01 rna ? GO:0000027 ... P68919 30552154
    86 6by1:CW (3.94) BS01 rna ? GO:0003735 ... P0A7L8 30552154
    87 6by1:CW (3.94) BS02 rna ? GO:0003735 ... P0A7L8 30552154
    88 6by1:CX (3.94) BS01 rna ? GO:0000027 ... P0A7M2 30552154
    89 6by1:CY (3.94) BS01 rna ? GO:0000027 ... P0A7M6 30552154
    90 6by1:CZ (3.94) BS01 rna ? GO:0000027 ... P0AG51 30552154
    91 6by1:D0 (3.94) BS01 ZN ? GO:0003735 ... P0A7M9 30552154
    92 6by1:D1 (3.94) BS01 rna ? GO:0000027 ... P0A7N4 30552154
    93 6by1:D2 (3.94) BS01 rna ? GO:0000027 ... P0A7N9 30552154
    94 6by1:D3 (3.94) BS01 rna ? GO:0002181 ... P0A7P5 30552154
    95 6by1:D4 (3.94) BS01 rna ? GO:0002181 ... P0A7Q1 30552154
    96 6by1:D6 (3.94) BS01 rna ? GO:0002181 ... P0A7Q6 30552154
    97 6by1:D6 (3.94) BS02 ZN ? GO:0002181 ... P0A7Q6 30552154
    98 6by1:DC (3.94) BS01 rna ? GO:0000027 ... P60422 30552154
    99 6by1:DD (3.94) BS01 rna ? GO:0000027 ... P60438 30552154
    100 6by1:DE (3.94) BS01 rna ? GO:0001070 ... P60723 30552154
    101 6by1:DF (3.94) BS01 rna ? GO:0000027 ... P62399 30552154
    102 6by1:DF (3.94) BS02 rna ? GO:0000027 ... P62399 30552154
    103 6by1:DF (3.94) BS03 rna ? GO:0000027 ... P62399 30552154
    104 6by1:DG (3.94) BS01 rna ? GO:0000027 ... P0AG55 30552154
    105 6by1:DH (3.94) BS01 rna ? GO:0002181 ... P0A7R1 30552154
    106 6by1:DI (3.94) BS01 rna ? GO:0003735 ... P0A7J7 30552154
    107 6by1:DJ (3.94) BS01 rna ? GO:0002181 ... P0AA10 30552154
    108 6by1:DK (3.94) BS01 rna ? GO:0002181 ... P0ADY3 30552154
    109 6by1:DK (3.94) BS02 rna ? GO:0002181 ... P0ADY3 30552154
    110 6by1:DL (3.94) BS01 rna ? GO:0002181 ... P02413 30552154
    111 6by1:DM (3.94) BS01 rna ? GO:0000027 ... P0ADY7 30552154
    112 6by1:DM (3.94) BS02 rna ? GO:0000027 ... P0ADY7 30552154
    113 6by1:DM (3.94) BS03 rna ? GO:0000027 ... P0ADY7 30552154
    114 6by1:DN (3.94) BS01 rna ? GO:0000027 ... P0AG44 30552154
    115 6by1:DO (3.94) BS01 rna ? GO:0002181 ... P0C018 30552154
    116 6by1:DO (3.94) BS02 rna ? GO:0002181 ... P0C018 30552154
    117 6by1:DP (3.94) BS01 rna ? GO:0000027 ... P0A7K6 30552154
    118 6by1:DP (3.94) BS02 rna ? GO:0000027 ... P0A7K6 30552154
    119 6by1:DQ (3.94) BS01 rna ? GO:0000027 ... P0A7L3 30552154
    120 6by1:DR (3.94) BS01 rna ? GO:0002181 ... P0AG48 30552154
    121 6by1:DS (3.94) BS01 rna ? GO:0002181 ... P61175 30552154
    122 6by1:DT (3.94) BS01 rna ? GO:0000027 ... P0ADZ0 30552154
    123 6by1:DU (3.94) BS01 rna ? GO:0000027 ... P60624 30552154
    124 6by1:DV (3.94) BS01 rna ? GO:0000027 ... P68919 30552154
    125 6by1:DW (3.94) BS01 rna ? GO:0003735 ... P0A7L8 30552154
    126 6by1:DW (3.94) BS02 rna ? GO:0003735 ... P0A7L8 30552154
    127 6by1:DX (3.94) BS01 rna ? GO:0000027 ... P0A7M2 30552154
    128 6by1:DY (3.94) BS01 rna ? GO:0000027 ... P0A7M6 30552154
    129 6by1:DZ (3.94) BS01 rna ? GO:0000027 ... P0AG51 30552154
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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