Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 30 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5xyi:A (3.35) BS01 rna ? GO:0000028 ... A2EFE7 28809395
    2 5xyi:B (3.35) BS01 rna ? GO:0003735 ... A2G9Z8 28809395
    3 5xyi:C (3.35) BS01 rna ? GO:0003723 ... A2EHK3 28809395
    4 5xyi:D (3.35) BS01 rna ? GO:0003723 ... A2DIM3 28809395
    5 5xyi:E (3.35) BS01 rna ? GO:0003723 ... A2FC75 28809395
    6 5xyi:F (3.35) BS01 rna ? GO:0000028 ... A2E4S6 28809395
    7 5xyi:H (3.35) BS01 rna ? GO:0003735 ... A2G5X6 28809395
    8 5xyi:I (3.35) BS01 rna ? GO:0000462 ... A2E1L5 28809395
    9 5xyi:J (3.35) BS01 rna ? GO:0003723 ... A2DNY3 28809395
    10 5xyi:K (3.35) BS01 rna ? GO:0003723 ... A2EBA2 28809395
    11 5xyi:L (3.35) BS01 rna ? GO:0003735 ... A2DHU8 28809395
    12 5xyi:M (3.35) BS01 rna ? GO:0003735 ... A2FA40 28809395
    13 5xyi:N (3.35) BS01 rna ? GO:0003735 ... A2D9L2 28809395
    14 5xyi:O (3.35) BS01 rna ? GO:0000028 ... Q76KS8 28809395
    15 5xyi:P (3.35) BS01 rna ? GO:0000028 ... A2DVD8 28809395
    16 5xyi:Q (3.35) BS01 rna ? GO:0000462 ... A2D919 28809395
    17 5xyi:R (3.35) BS01 rna ? GO:0003735 ... A2DPS3 28809395
    18 5xyi:S (3.35) BS01 rna ? GO:0003676 ... A2DTR8 28809395
    19 5xyi:T (3.35) BS01 rna ? GO:0000028 ... A2EG54 28809395
    20 5xyi:U (3.35) BS01 rna ? GO:0003735 ... A2FDE0 28809395
    21 5xyi:W (3.35) BS01 rna ? GO:0003735 ... A2DLW4 28809395
    22 5xyi:X (3.35) BS01 rna ? GO:0003735 ... A2D895 28809395
    23 5xyi:Y (3.35) BS01 rna ? GO:0003735 ... A2F0H5 28809395
    24 5xyi:Z (3.35) BS01 rna ? GO:0003735 ... A2ER97 28809395
    25 5xyi:a (3.35) BS01 rna ? GO:0003729 ... A2DST7 28809395
    26 5xyi:b (3.35) BS01 rna ? GO:0000028 ... A2FBZ2 28809395
    27 5xyi:c (3.35) BS01 rna ? GO:0000028 ... A2DQN8 28809395
    28 5xyi:d (3.35) BS01 rna ? GO:0002181 ... A2DYA8 28809395
    29 5xyi:e (3.35) BS01 rna ? GO:0003735 ... A2FHY5 28809395
    30 5xyi:g (3.35) BS01 rna ? GO:0005080 ... A2ELV7 28809395
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218