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BioLiP
Download all results in tab-seperated text for 57 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5xno:1 (3.5) BS01 CHL ? GO:0009765 ... P27490 28839073
    2 5xno:1 (3.5) BS02 CLA ? GO:0009765 ... P27490 28839073
    3 5xno:1 (3.5) BS03 CLA ? GO:0009765 ... P27490 28839073
    4 5xno:1 (3.5) BS04 CHL ? GO:0009765 ... P27490 28839073
    5 5xno:1 (3.5) BS05 CHL ? GO:0009765 ... P27490 28839073
    6 5xno:1 (3.5) BS06 CHL ? GO:0009765 ... P27490 28839073
    7 5xno:1 (3.5) BS07 CHL ? GO:0009765 ... P27490 28839073
    8 5xno:1 (3.5) BS08 CHL ? GO:0009765 ... P27490 28839073
    9 5xno:1 (3.5) BS09 CLA ? GO:0009765 ... P27490 28839073
    10 5xno:1 (3.5) BS10 CLA ? GO:0009765 ... P27490 28839073
    11 5xno:1 (3.5) BS11 CLA ? GO:0009765 ... P27490 28839073
    12 5xno:1 (3.5) BS12 CLA ? GO:0009765 ... P27490 28839073
    13 5xno:1 (3.5) BS13 CLA ? GO:0009765 ... P27490 28839073
    14 5xno:1 (3.5) BS14 CHL ? GO:0009765 ... P27490 28839073
    15 5xno:1 (3.5) BS15 CHL ? GO:0009765 ... P27490 28839073
    16 5xno:2 (3.5) BS01 CHL ? GO:0009765 ... P27490 28839073
    17 5xno:2 (3.5) BS02 CLA ? GO:0009765 ... P27490 28839073
    18 5xno:2 (3.5) BS03 CLA ? GO:0009765 ... P27490 28839073
    19 5xno:2 (3.5) BS04 CLA ? GO:0009765 ... P27490 28839073
    20 5xno:2 (3.5) BS05 CHL ? GO:0009765 ... P27490 28839073
    21 5xno:2 (3.5) BS06 CHL ? GO:0009765 ... P27490 28839073
    22 5xno:2 (3.5) BS07 CHL ? GO:0009765 ... P27490 28839073
    23 5xno:2 (3.5) BS08 CHL ? GO:0009765 ... P27490 28839073
    24 5xno:2 (3.5) BS09 CHL ? GO:0009765 ... P27490 28839073
    25 5xno:2 (3.5) BS10 CLA ? GO:0009765 ... P27490 28839073
    26 5xno:2 (3.5) BS11 CLA ? GO:0009765 ... P27490 28839073
    27 5xno:2 (3.5) BS12 CLA ? GO:0009765 ... P27490 28839073
    28 5xno:2 (3.5) BS13 CLA ? GO:0009765 ... P27490 28839073
    29 5xno:2 (3.5) BS14 CLA ? GO:0009765 ... P27490 28839073
    30 5xno:2 (3.5) BS15 CHL ? GO:0009765 ... P27490 28839073
    31 5xno:3 (3.5) BS01 CHL ? GO:0009416 ... Q04918 28839073
    32 5xno:3 (3.5) BS02 CHL ? GO:0009416 ... Q04918 28839073
    33 5xno:3 (3.5) BS03 CHL ? GO:0009416 ... Q04918 28839073
    34 5xno:3 (3.5) BS04 CLA ? GO:0009416 ... Q04918 28839073
    35 5xno:3 (3.5) BS05 CLA ? GO:0009416 ... Q04918 28839073
    36 5xno:3 (3.5) BS06 CLA ? GO:0009416 ... Q04918 28839073
    37 5xno:3 (3.5) BS07 CHL ? GO:0009416 ... Q04918 28839073
    38 5xno:3 (3.5) BS08 CHL ? GO:0009416 ... Q04918 28839073
    39 5xno:3 (3.5) BS09 CHL ? GO:0009416 ... Q04918 28839073
    40 5xno:3 (3.5) BS10 CHL ? GO:0009416 ... Q04918 28839073
    41 5xno:3 (3.5) BS11 CHL ? GO:0009416 ... Q04918 28839073
    42 5xno:3 (3.5) BS12 CLA ? GO:0009416 ... Q04918 28839073
    43 5xno:3 (3.5) BS13 CLA ? GO:0009416 ... Q04918 28839073
    44 5xno:3 (3.5) BS14 CLA ? GO:0009416 ... Q04918 28839073
    45 5xno:3 (3.5) BS15 CLA ? GO:0009416 ... Q04918 28839073
    46 5xno:3 (3.5) BS16 CLA ? GO:0009416 ... Q04918 28839073
    47 5xno:4 (3.5) BS01 CLA ? GO:0009416 ... A0A2D0TCJ3 28839073
    48 5xno:4 (3.5) BS02 CHL ? GO:0009416 ... A0A2D0TCJ3 28839073
    49 5xno:4 (3.5) BS03 CLA ? GO:0009416 ... A0A2D0TCJ3 28839073
    50 5xno:4 (3.5) BS04 CLA ? GO:0009416 ... A0A2D0TCJ3 28839073
    51 5xno:4 (3.5) BS05 CLA ? GO:0009416 ... A0A2D0TCJ3 28839073
    52 5xno:4 (3.5) BS06 CHL ? GO:0009416 ... A0A2D0TCJ3 28839073
    53 5xno:4 (3.5) BS07 CHL ? GO:0009416 ... A0A2D0TCJ3 28839073
    54 5xno:4 (3.5) BS08 CHL ? GO:0009416 ... A0A2D0TCJ3 28839073
    55 5xno:4 (3.5) BS09 CHL ? GO:0009416 ... A0A2D0TCJ3 28839073
    56 5xno:4 (3.5) BS10 CLA ? GO:0009416 ... A0A2D0TCJ3 28839073
    57 5xno:4 (3.5) BS11 CLA ? GO:0009416 ... A0A2D0TCJ3 28839073
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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