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BioLiP
Download all results in tab-seperated text for 75 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5wdt:0 (3.0) BS01 rna ? GO:0000027 ... P0A7N4 29733411
    2 5wdt:1 (3.0) BS01 rna ? GO:0000027 ... P0A7N9 29733411
    3 5wdt:1 (3.0) BS02 rna ? GO:0000027 ... P0A7N9 29733411
    4 5wdt:2 (3.0) BS01 rna ? GO:0002181 ... P0A7P5 29733411
    5 5wdt:3 (3.0) BS01 rna ? GO:0002181 ... P0A7Q1 29733411
    6 5wdt:3 (3.0) BS02 MG ? GO:0002181 ... P0A7Q1 29733411
    7 5wdt:4 (3.0) BS01 rna ? GO:0002181 ... P0A7Q6 29733411
    8 5wdt:5 (3.0) BS01 rna ? GO:0003735 ... P0A7J3 29733411
    9 5wdt:6 (3.0) BS01 rna ? GO:0002181 ... P0A7M9 29733411
    10 5wdt:C (3.0) BS01 rna ? GO:0000027 ... P60422 29733411
    11 5wdt:C (3.0) BS02 rna ? GO:0000027 ... P60422 29733411
    12 5wdt:D (3.0) BS01 rna ? GO:0000027 ... P60438 29733411
    13 5wdt:E (3.0) BS01 rna ? GO:0001070 ... P60723 29733411
    14 5wdt:F (3.0) BS01 rna ? GO:0000027 ... P62399 29733411
    15 5wdt:F (3.0) BS02 rna ? GO:0000027 ... P62399 29733411
    16 5wdt:F (3.0) BS03 rna ? GO:0000027 ... P62399 29733411
    17 5wdt:G (3.0) BS01 rna ? GO:0000027 ... P0AG55 29733411
    18 5wdt:H (3.0) BS01 rna ? GO:0002181 ... P0A7R1 29733411
    19 5wdt:I (3.0) BS01 rna ? GO:0000027 ... P0A7J7 29733411
    20 5wdt:J (3.0) BS01 rna ? GO:0002181 ... P0AA10 29733411
    21 5wdt:K (3.0) BS01 rna ? GO:0002181 ... P0ADY3 29733411
    22 5wdt:K (3.0) BS02 rna ? GO:0002181 ... P0ADY3 29733411
    23 5wdt:L (3.0) BS01 rna ? GO:0002181 ... P02413 29733411
    24 5wdt:M (3.0) BS01 rna ? GO:0000027 ... P0ADY7 29733411
    25 5wdt:M (3.0) BS02 rna ? GO:0000027 ... P0ADY7 29733411
    26 5wdt:N (3.0) BS01 rna ? GO:0000027 ... P0AG44 29733411
    27 5wdt:O (3.0) BS01 rna ? GO:0002181 ... P0C018 29733411
    28 5wdt:O (3.0) BS02 rna ? GO:0002181 ... P0C018 29733411
    29 5wdt:P (3.0) BS01 rna ? GO:0000027 ... P0A7K6 29733411
    30 5wdt:P (3.0) BS02 rna ? GO:0000027 ... P0A7K6 29733411
    31 5wdt:Q (3.0) BS01 rna ? GO:0000027 ... P0A7L3 29733411
    32 5wdt:R (3.0) BS01 rna ? GO:0002181 ... P0AG48 29733411
    33 5wdt:S (3.0) BS01 rna ? GO:0002181 ... P61175 29733411
    34 5wdt:T (3.0) BS01 rna ? GO:0000027 ... P0ADZ0 29733411
    35 5wdt:U (3.0) BS01 rna ? GO:0000027 ... P60624 29733411
    36 5wdt:V (3.0) BS01 rna ? GO:0000027 ... P68919 29733411
    37 5wdt:V (3.0) BS02 rna ? GO:0000027 ... P68919 29733411
    38 5wdt:W (3.0) BS01 rna ? GO:0003735 ... P0A7L8 29733411
    39 5wdt:W (3.0) BS02 rna ? GO:0003735 ... P0A7L8 29733411
    40 5wdt:X (3.0) BS01 rna ? GO:0000027 ... P0A7M2 29733411
    41 5wdt:Y (3.0) BS01 rna ? GO:0000027 ... P0A7M6 29733411
    42 5wdt:Z (3.0) BS01 rna ? GO:0000027 ... P0AG51 29733411
    43 5wdt:Z (3.0) BS02 rna ? GO:0000027 ... P0AG51 29733411
    44 5wdt:Z (3.0) BS03 MG ? GO:0000027 ... P0AG51 29733411
    45 5wdt:b (3.0) BS01 rna ? GO:0000028 ... P0A7V0 29733411
    46 5wdt:c (3.0) BS01 rna ? GO:0003676 ... P0A7V3 29733411
    47 5wdt:d (3.0) BS01 rna ? GO:0000028 ... P0A7V8 29733411
    48 5wdt:e (3.0) BS01 rna ? GO:0000028 ... P0A7W1 29733411
    49 5wdt:e (3.0) BS02 rna ? GO:0000028 ... P0A7W1 29733411
    50 5wdt:f (3.0) BS01 rna ? GO:0003735 ... P02358 29733411
    51 5wdt:g (3.0) BS01 rna ? GO:0003723 ... P02359 29733411
    52 5wdt:g (3.0) BS02 rna ? GO:0003723 ... P02359 29733411
    53 5wdt:h (3.0) BS01 rna ? GO:0000028 ... P0A7W7 29733411
    54 5wdt:i (3.0) BS01 rna ? GO:0000049 ... P0A7X3 29733411
    55 5wdt:i (3.0) BS02 rna ? GO:0000049 ... P0A7X3 29733411
    56 5wdt:j (3.0) BS01 rna ? GO:0000049 ... P0A7R5 29733411
    57 5wdt:k (3.0) BS01 rna ? GO:0002181 ... P0A7R9 29733411
    58 5wdt:l (3.0) BS01 rna ? GO:0000049 ... P0A7S3 29733411
    59 5wdt:m (3.0) BS01 rna ? GO:0000049 ... P0A7S9 29733411
    60 5wdt:n (3.0) BS01 rna ? GO:0003735 ... P0AG59 29733411
    61 5wdt:o (3.0) BS01 rna ? GO:0000028 ... P0ADZ4 29733411
    62 5wdt:o (3.0) BS02 rna ? GO:0000028 ... P0ADZ4 29733411
    63 5wdt:p (3.0) BS01 rna ? GO:0000028 ... P0A7T3 29733411
    64 5wdt:q (3.0) BS01 rna ? GO:0000028 ... P0AG63 29733411
    65 5wdt:r (3.0) BS01 rna ? GO:0003735 ... P0A7T7 29733411
    66 5wdt:s (3.0) BS01 rna ? GO:0003723 ... P0A7U3 29733411
    67 5wdt:t (3.0) BS01 rna ? GO:0000028 ... P0A7U7 29733411
    68 5wdt:t (3.0) BS02 MG ? GO:0000028 ... P0A7U7 29733411
    69 5wdt:u (3.0) BS01 rna ? GO:0000028 ... P68679 29733411
    70 5wdt:z (3.0) BS01 rna ? GO:0003723 ... P0CE48 29733411
    71 5wdt:z (3.0) BS02 rna ? GO:0003723 ... P0CE48 29733411
    72 5wdt:z (3.0) BS03 rna ? GO:0003723 ... P0CE48 29733411
    73 5wdt:z (3.0) BS04 PHE ? GO:0003723 ... P0CE48 29733411
    74 5wdt:z (3.0) BS05 GNP ? GO:0003723 ... P0CE48 29733411
    75 5wdt:z (3.0) BS06 MG ? GO:0003723 ... P0CE48 29733411
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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