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BioLiP
Download all results in tab-seperated text for 68 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5mdw:6 (3.06) BS01 rna ? GO:0072344 ... P36675 27934701
    2 5mdw:7 (3.06) BS01 rna ? GO:0003747 ... P07012 27934701
    3 5mdw:7 (3.06) BS02 rna ? GO:0003747 ... P07012 27934701
    4 5mdw:B (3.06) BS01 rna ? GO:0000027 ... P60422 27934701
    5 5mdw:C (3.06) BS01 rna ? GO:0000027 ... P60438 27934701
    6 5mdw:D (3.06) BS01 rna ? GO:0001070 ... P60723 27934701
    7 5mdw:E (3.06) BS01 rna ? GO:0000027 ... P62399 27934701
    8 5mdw:E (3.06) BS02 rna ? GO:0000027 ... P62399 27934701
    9 5mdw:E (3.06) BS03 rna ? GO:0000027 ... P62399 27934701
    10 5mdw:F (3.06) BS01 rna ? GO:0000027 ... P0AG55 27934701
    11 5mdw:G (3.06) BS01 rna ? GO:0002181 ... P0A7R1 27934701
    12 5mdw:H (3.06) BS01 rna ? GO:0002181 ... P0A7J3 27934701
    13 5mdw:I (3.06) BS01 rna ? GO:0000027 ... P0A7J7 27934701
    14 5mdw:J (3.06) BS01 rna ? GO:0002181 ... P0AA10 27934701
    15 5mdw:K (3.06) BS01 rna ? GO:0002181 ... P0ADY3 27934701
    16 5mdw:K (3.06) BS02 rna ? GO:0002181 ... P0ADY3 27934701
    17 5mdw:L (3.06) BS01 rna ? GO:0002181 ... P02413 27934701
    18 5mdw:M (3.06) BS01 rna ? GO:0000027 ... P0ADY7 27934701
    19 5mdw:M (3.06) BS02 rna ? GO:0000027 ... P0ADY7 27934701
    20 5mdw:N (3.06) BS01 rna ? GO:0000027 ... P0AG44 27934701
    21 5mdw:O (3.06) BS01 rna ? GO:0002181 ... P0C018 27934701
    22 5mdw:O (3.06) BS02 rna ? GO:0002181 ... P0C018 27934701
    23 5mdw:P (3.06) BS01 rna ? GO:0000027 ... P0A7K6 27934701
    24 5mdw:P (3.06) BS02 rna ? GO:0000027 ... P0A7K6 27934701
    25 5mdw:Q (3.06) BS01 rna ? GO:0000027 ... P0A7L3 27934701
    26 5mdw:R (3.06) BS01 rna ? GO:0002181 ... P0AG48 27934701
    27 5mdw:S (3.06) BS01 rna ? GO:0002181 ... P61175 27934701
    28 5mdw:T (3.06) BS01 rna ? GO:0000027 ... P0ADZ0 27934701
    29 5mdw:U (3.06) BS01 rna ? GO:0000027 ... P60624 27934701
    30 5mdw:V (3.06) BS01 rna ? GO:0000027 ... P68919 27934701
    31 5mdw:V (3.06) BS02 rna ? GO:0000027 ... P68919 27934701
    32 5mdw:W (3.06) BS01 rna ? GO:0000027 ... P0A7L8 27934701
    33 5mdw:W (3.06) BS02 rna ? GO:0000027 ... P0A7L8 27934701
    34 5mdw:X (3.06) BS01 rna ? GO:0000027 ... P0A7M2 27934701
    35 5mdw:Y (3.06) BS01 rna ? GO:0000027 ... P0A7M6 27934701
    36 5mdw:Z (3.06) BS01 rna ? GO:0000027 ... P0AG51 27934701
    37 5mdw:Z (3.06) BS02 rna ? GO:0000027 ... P0AG51 27934701
    38 5mdw:a (3.06) BS01 rna ? GO:0002181 ... P0A7M9 27934701
    39 5mdw:b (3.06) BS01 rna ? GO:0000027 ... P0A7N4 27934701
    40 5mdw:c (3.06) BS01 rna ? GO:0000027 ... P0A7N9 27934701
    41 5mdw:d (3.06) BS01 rna ? GO:0002181 ... P0A7P5 27934701
    42 5mdw:e (3.06) BS01 rna ? GO:0002181 ... P0A7Q1 27934701
    43 5mdw:f (3.06) BS01 rna ? GO:0002181 ... P0A7Q6 27934701
    44 5mdw:f (3.06) BS02 ZN ? GO:0002181 ... P0A7Q6 27934701
    45 5mdw:g (3.06) BS01 rna ? GO:0000028 ... P0A7V0 27934701
    46 5mdw:h (3.06) BS01 rna ? GO:0000028 ... P0A7V3 27934701
    47 5mdw:i (3.06) BS01 rna ? GO:0000028 ... P0A7V8 27934701
    48 5mdw:j (3.06) BS01 rna ? GO:0000028 ... P0A7W1 27934701
    49 5mdw:k (3.06) BS01 rna ? GO:0002181 ... P02358 27934701
    50 5mdw:l (3.06) BS01 rna ? GO:0000028 ... P02359 27934701
    51 5mdw:m (3.06) BS01 rna ? GO:0000028 ... P0A7W7 27934701
    52 5mdw:n (3.06) BS01 rna ? GO:0000049 ... P0A7X3 27934701
    53 5mdw:n (3.06) BS02 rna ? GO:0000049 ... P0A7X3 27934701
    54 5mdw:o (3.06) BS01 rna ? GO:0000049 ... P0A7R5 27934701
    55 5mdw:p (3.06) BS01 rna ? GO:0002181 ... P0A7R9 27934701
    56 5mdw:q (3.06) BS01 rna ? GO:0000049 ... P0A7S3 27934701
    57 5mdw:r (3.06) BS01 rna ? GO:0000049 ... P0A7S9 27934701
    58 5mdw:r (3.06) BS02 rna ? GO:0000049 ... P0A7S9 27934701
    59 5mdw:r (3.06) BS03 MG ? GO:0000049 ... P0A7S9 27934701
    60 5mdw:s (3.06) BS01 rna ? GO:0000028 ... P0AG59 27934701
    61 5mdw:t (3.06) BS01 rna ? GO:0000028 ... P0ADZ4 27934701
    62 5mdw:t (3.06) BS02 rna ? GO:0000028 ... P0ADZ4 27934701
    63 5mdw:u (3.06) BS01 rna ? GO:0000028 ... P0A7T3 27934701
    64 5mdw:v (3.06) BS01 rna ? GO:0000028 ... P0AG63 27934701
    65 5mdw:w (3.06) BS01 rna ? GO:0002181 ... P0A7T7 27934701
    66 5mdw:x (3.06) BS01 rna ? GO:0000028 ... P0A7U3 27934701
    67 5mdw:y (3.06) BS01 rna ? GO:0000028 ... P0A7U7 27934701
    68 5mdw:z (3.06) BS01 rna ? GO:0000028 ... P68679 27934701
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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