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BioLiP
Download all results in tab-seperated text for 123 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5j7l:AB (3.0) BS01 rna ? GO:0000028 ... P0A7V0 27382179
    2 5j7l:AB (3.0) BS02 ZN ? GO:0000028 ... P0A7V0 27382179
    3 5j7l:AC (3.0) BS01 rna ? GO:0003676 ... P0A7V3 27382179
    4 5j7l:AD (3.0) BS01 rna ? GO:0000028 ... P0A7V8 27382179
    5 5j7l:AE (3.0) BS01 rna ? GO:0000028 ... P0A7W1 27382179
    6 5j7l:AF (3.0) BS01 rna ? GO:0003735 ... P02358 27382179
    7 5j7l:AG (3.0) BS01 rna ? GO:0003723 ... P02359 27382179
    8 5j7l:AH (3.0) BS01 rna ? GO:0000028 ... P0A7W7 27382179
    9 5j7l:AI (3.0) BS01 rna ? GO:0000049 ... P0A7X3 27382179
    10 5j7l:AJ (3.0) BS01 rna ? GO:0000049 ... P0A7R5 27382179
    11 5j7l:AK (3.0) BS01 rna ? GO:0002181 ... P0A7R9 27382179
    12 5j7l:AL (3.0) BS01 rna ? GO:0000049 ... P0A7S3 27382179
    13 5j7l:AM (3.0) BS01 rna ? GO:0000049 ... P0A7S9 27382179
    14 5j7l:AN (3.0) BS01 rna ? GO:0000028 ... P0AG59 27382179
    15 5j7l:AO (3.0) BS01 rna ? GO:0000028 ... P0ADZ4 27382179
    16 5j7l:AO (3.0) BS02 rna ? GO:0000028 ... P0ADZ4 27382179
    17 5j7l:AP (3.0) BS01 rna ? GO:0000028 ... P0A7T3 27382179
    18 5j7l:AQ (3.0) BS01 rna ? GO:0000028 ... P0AG63 27382179
    19 5j7l:AR (3.0) BS01 rna ? GO:0003735 ... P0A7T7 27382179
    20 5j7l:AS (3.0) BS01 rna ? GO:0003723 ... P0A7U3 27382179
    21 5j7l:AT (3.0) BS01 rna ? GO:0000028 ... P0A7U7 27382179
    22 5j7l:AU (3.0) BS01 rna ? GO:0003735 ... P68679 27382179
    23 5j7l:BB (3.0) BS01 rna ? GO:0000028 ... P0A7V0 27382179
    24 5j7l:BB (3.0) BS02 rna ? GO:0000028 ... P0A7V0 27382179
    25 5j7l:BC (3.0) BS01 rna ? GO:0003676 ... P0A7V3 27382179
    26 5j7l:BD (3.0) BS01 rna ? GO:0000028 ... P0A7V8 27382179
    27 5j7l:BD (3.0) BS02 rna ? GO:0000028 ... P0A7V8 27382179
    28 5j7l:BE (3.0) BS01 rna ? GO:0000028 ... P0A7W1 27382179
    29 5j7l:BF (3.0) BS01 rna ? GO:0003735 ... P02358 27382179
    30 5j7l:BG (3.0) BS01 rna ? GO:0003723 ... P02359 27382179
    31 5j7l:BH (3.0) BS01 rna ? GO:0000028 ... P0A7W7 27382179
    32 5j7l:BI (3.0) BS01 rna ? GO:0000049 ... P0A7X3 27382179
    33 5j7l:BJ (3.0) BS01 rna ? GO:0000049 ... P0A7R5 27382179
    34 5j7l:BK (3.0) BS01 rna ? GO:0002181 ... P0A7R9 27382179
    35 5j7l:BL (3.0) BS01 rna ? GO:0000049 ... P0A7S3 27382179
    36 5j7l:BM (3.0) BS01 rna ? GO:0000049 ... P0A7S9 27382179
    37 5j7l:BN (3.0) BS01 rna ? GO:0000028 ... P0AG59 27382179
    38 5j7l:BO (3.0) BS01 rna ? GO:0000028 ... P0ADZ4 27382179
    39 5j7l:BO (3.0) BS02 rna ? GO:0000028 ... P0ADZ4 27382179
    40 5j7l:BP (3.0) BS01 rna ? GO:0000028 ... P0A7T3 27382179
    41 5j7l:BQ (3.0) BS01 rna ? GO:0000028 ... P0AG63 27382179
    42 5j7l:BR (3.0) BS01 rna ? GO:0003735 ... P0A7T7 27382179
    43 5j7l:BS (3.0) BS01 rna ? GO:0003723 ... P0A7U3 27382179
    44 5j7l:BT (3.0) BS01 rna ? GO:0000028 ... P0A7U7 27382179
    45 5j7l:BU (3.0) BS01 rna ? GO:0003735 ... P68679 27382179
    46 5j7l:C0 (3.0) BS01 rna ? GO:0000027 ... P0AG51 27382179
    47 5j7l:C0 (3.0) BS02 rna ? GO:0000027 ... P0AG51 27382179
    48 5j7l:C1 (3.0) BS01 rna ? GO:0000027 ... P0A7N4 27382179
    49 5j7l:C2 (3.0) BS01 rna ? GO:0000027 ... P0A7N9 27382179
    50 5j7l:C3 (3.0) BS01 rna ? GO:0002181 ... P0A7P5 27382179
    51 5j7l:C4 (3.0) BS01 rna ? GO:0002181 ... P0A7Q1 27382179
    52 5j7l:C5 (3.0) BS01 rna ? GO:0002181 ... P0A7Q6 27382179
    53 5j7l:C5 (3.0) BS02 ZN ? GO:0002181 ... P0A7Q6 27382179
    54 5j7l:CC (3.0) BS01 rna ? GO:0000027 ... P60422 27382179
    55 5j7l:CC (3.0) BS02 rna ? GO:0000027 ... P60422 27382179
    56 5j7l:CD (3.0) BS01 rna ? GO:0000027 ... P60438 27382179
    57 5j7l:CE (3.0) BS01 rna ? GO:0001070 ... P60723 27382179
    58 5j7l:CF (3.0) BS01 rna ? GO:0000027 ... P62399 27382179
    59 5j7l:CF (3.0) BS02 rna ? GO:0000027 ... P62399 27382179
    60 5j7l:CG (3.0) BS01 rna ? GO:0000027 ... P0AG55 27382179
    61 5j7l:CH (3.0) BS01 rna ? GO:0002181 ... P0A7R1 27382179
    62 5j7l:CJ (3.0) BS01 rna ? GO:0000027 ... P0A7J7 27382179
    63 5j7l:CK (3.0) BS01 rna ? GO:0002181 ... P0AA10 27382179
    64 5j7l:CL (3.0) BS01 rna ? GO:0002181 ... P0ADY3 27382179
    65 5j7l:CL (3.0) BS02 rna ? GO:0002181 ... P0ADY3 27382179
    66 5j7l:CM (3.0) BS01 rna ? GO:0002181 ... P02413 27382179
    67 5j7l:CN (3.0) BS01 rna ? GO:0000027 ... P0ADY7 27382179
    68 5j7l:CN (3.0) BS02 rna ? GO:0000027 ... P0ADY7 27382179
    69 5j7l:CO (3.0) BS01 rna ? GO:0000027 ... P0AG44 27382179
    70 5j7l:CP (3.0) BS01 rna ? GO:0002181 ... P0C018 27382179
    71 5j7l:CP (3.0) BS02 rna ? GO:0002181 ... P0C018 27382179
    72 5j7l:CQ (3.0) BS01 rna ? GO:0000027 ... P0A7K6 27382179
    73 5j7l:CQ (3.0) BS02 rna ? GO:0000027 ... P0A7K6 27382179
    74 5j7l:CR (3.0) BS01 rna ? GO:0000027 ... P0A7L3 27382179
    75 5j7l:CS (3.0) BS01 rna ? GO:0002181 ... P0AG48 27382179
    76 5j7l:CT (3.0) BS01 rna ? GO:0002181 ... P61175 27382179
    77 5j7l:CU (3.0) BS01 rna ? GO:0000027 ... P0ADZ0 27382179
    78 5j7l:CV (3.0) BS01 rna ? GO:0000027 ... P60624 27382179
    79 5j7l:CW (3.0) BS01 rna ? GO:0000027 ... P68919 27382179
    80 5j7l:CW (3.0) BS02 rna ? GO:0000027 ... P68919 27382179
    81 5j7l:CX (3.0) BS01 rna ? GO:0003735 ... P0A7L8 27382179
    82 5j7l:CX (3.0) BS02 rna ? GO:0003735 ... P0A7L8 27382179
    83 5j7l:CY (3.0) BS01 rna ? GO:0000027 ... P0A7M2 27382179
    84 5j7l:CZ (3.0) BS01 rna ? GO:0000027 ... P0A7M6 27382179
    85 5j7l:D0 (3.0) BS01 rna ? GO:0000027 ... P0AG51 27382179
    86 5j7l:D1 (3.0) BS01 rna ? GO:0000027 ... P0A7N4 27382179
    87 5j7l:D2 (3.0) BS01 rna ? GO:0000027 ... P0A7N9 27382179
    88 5j7l:D3 (3.0) BS01 rna ? GO:0002181 ... P0A7P5 27382179
    89 5j7l:D4 (3.0) BS01 rna ? GO:0002181 ... P0A7Q1 27382179
    90 5j7l:D5 (3.0) BS01 rna ? GO:0002181 ... P0A7Q6 27382179
    91 5j7l:D5 (3.0) BS02 ZN ? GO:0002181 ... P0A7Q6 27382179
    92 5j7l:DC (3.0) BS01 rna ? GO:0000027 ... P60422 27382179
    93 5j7l:DD (3.0) BS01 rna ? GO:0000027 ... P60438 27382179
    94 5j7l:DE (3.0) BS01 rna ? GO:0001070 ... P60723 27382179
    95 5j7l:DF (3.0) BS01 rna ? GO:0000027 ... P62399 27382179
    96 5j7l:DF (3.0) BS02 rna ? GO:0000027 ... P62399 27382179
    97 5j7l:DG (3.0) BS01 rna ? GO:0000027 ... P0AG55 27382179
    98 5j7l:DH (3.0) BS01 rna ? GO:0002181 ... P0A7R1 27382179
    99 5j7l:DH (3.0) BS02 rna ? GO:0002181 ... P0A7R1 27382179
    100 5j7l:DI (3.0) BS01 rna ? GO:0003735 ... P0A7J3 27382179
    101 5j7l:DJ (3.0) BS01 rna ? GO:0000027 ... P0A7J7 27382179
    102 5j7l:DK (3.0) BS01 rna ? GO:0002181 ... P0AA10 27382179
    103 5j7l:DL (3.0) BS01 rna ? GO:0002181 ... P0ADY3 27382179
    104 5j7l:DL (3.0) BS02 rna ? GO:0002181 ... P0ADY3 27382179
    105 5j7l:DM (3.0) BS01 rna ? GO:0002181 ... P02413 27382179
    106 5j7l:DN (3.0) BS01 rna ? GO:0000027 ... P0ADY7 27382179
    107 5j7l:DN (3.0) BS02 rna ? GO:0000027 ... P0ADY7 27382179
    108 5j7l:DO (3.0) BS01 rna ? GO:0000027 ... P0AG44 27382179
    109 5j7l:DP (3.0) BS01 rna ? GO:0002181 ... P0C018 27382179
    110 5j7l:DP (3.0) BS02 rna ? GO:0002181 ... P0C018 27382179
    111 5j7l:DQ (3.0) BS01 rna ? GO:0000027 ... P0A7K6 27382179
    112 5j7l:DQ (3.0) BS02 rna ? GO:0000027 ... P0A7K6 27382179
    113 5j7l:DR (3.0) BS01 rna ? GO:0000027 ... P0A7L3 27382179
    114 5j7l:DS (3.0) BS01 rna ? GO:0002181 ... P0AG48 27382179
    115 5j7l:DT (3.0) BS01 rna ? GO:0002181 ... P61175 27382179
    116 5j7l:DU (3.0) BS01 rna ? GO:0000027 ... P0ADZ0 27382179
    117 5j7l:DV (3.0) BS01 rna ? GO:0000027 ... P60624 27382179
    118 5j7l:DW (3.0) BS01 rna ? GO:0000027 ... P68919 27382179
    119 5j7l:DW (3.0) BS02 rna ? GO:0000027 ... P68919 27382179
    120 5j7l:DX (3.0) BS01 rna ? GO:0003735 ... P0A7L8 27382179
    121 5j7l:DX (3.0) BS02 rna ? GO:0003735 ... P0A7L8 27382179
    122 5j7l:DY (3.0) BS01 rna ? GO:0000027 ... P0A7M2 27382179
    123 5j7l:DZ (3.0) BS01 rna ? GO:0000027 ... P0A7M6 27382179
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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