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BioLiP
Download all results in tab-seperated text for 27 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5iy9:A (6.3) BS01 dna 2.7.7.48
    2.7.7.6
    3.1.13.-    		 GO:0000287 ... P24928 27193682
    2 5iy9:A (6.3) BS02 dna 2.7.7.48
    2.7.7.6
    3.1.13.-    		 GO:0000287 ... P24928 27193682
    3 5iy9:A (6.3) BS03 MG 2.7.7.48
    2.7.7.6
    3.1.13.-    		 GO:0000287 ... P24928 27193682
    4 5iy9:A (6.3) BS04 ZN 2.7.7.48
    2.7.7.6
    3.1.13.-    		 GO:0000287 ... P24928 27193682
    5 5iy9:A (6.3) BS05 ZN 2.7.7.48
    2.7.7.6
    3.1.13.-    		 GO:0000287 ... P24928 27193682
    6 5iy9:B (6.3) BS01 dna 2.7.7.48
    2.7.7.6
    3.1.13.-    		 GO:0000428 ... P30876 27193682
    7 5iy9:B (6.3) BS02 dna 2.7.7.48
    2.7.7.6
    3.1.13.-    		 GO:0000428 ... P30876 27193682
    8 5iy9:B (6.3) BS03 rna 2.7.7.48
    2.7.7.6
    3.1.13.-    		 GO:0000428 ... P30876 27193682
    9 5iy9:B (6.3) BS04 ZN 2.7.7.48
    2.7.7.6
    3.1.13.-    		 GO:0000428 ... P30876 27193682
    10 5iy9:C (6.3) BS01 ZN ? GO:0000428 ... P19387 27193682
    11 5iy9:E (6.3) BS01 dna ? GO:0000428 ... P19388 27193682
    12 5iy9:I (6.3) BS01 ZN ? GO:0000428 ... P36954 27193682
    13 5iy9:I (6.3) BS02 ZN ? GO:0000428 ... P36954 27193682
    14 5iy9:J (6.3) BS01 ZN ? GO:0000428 ... P62875 27193682
    15 5iy9:L (6.3) BS01 ZN ? GO:0000428 ... P53803 27193682
    16 5iy9:M (6.3) BS01 dna 2.3.1.48 GO:0000776 ... Q00403 27193682
    17 5iy9:M (6.3) BS02 dna 2.3.1.48 GO:0000776 ... Q00403 27193682
    18 5iy9:M (6.3) BS03 rna 2.3.1.48 GO:0000776 ... Q00403 27193682
    19 5iy9:M (6.3) BS04 ZN 2.3.1.48 GO:0000776 ... Q00403 27193682
    20 5iy9:N (6.3) BS01 dna ? GO:0000979 ... P52655 27193682
    21 5iy9:P (6.3) BS01 dna ? GO:0000785 ... P20226 27193682
    22 5iy9:P (6.3) BS02 dna ? GO:0000785 ... P20226 27193682
    23 5iy9:Q (6.3) BS01 ZN ? GO:0001113 ... P29083 27193682
    24 5iy9:T (6.3) BS01 dna 3.6.4.12 GO:0003677 ... P13984 27193682
    25 5iy9:T (6.3) BS02 dna 3.6.4.12 GO:0003677 ... P13984 27193682
    26 5iy9:V (6.3) BS01 dna 5.6.2.4 GO:0000112 ... P19447 27193682
    27 5iy9:V (6.3) BS02 dna 5.6.2.4 GO:0000112 ... P19447 27193682
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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