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BioLiP
Download all results in tab-seperated text for 57 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5h4p:A (3.07) BS01 rna ? GO:0002181 ... P0CX45 28112732
    2 5h4p:B (3.07) BS01 rna ? GO:0000027 ... P14126 28112732
    3 5h4p:C (3.07) BS01 rna ? GO:0002181 ... P10664 28112732
    4 5h4p:C (3.07) BS02 rna ? GO:0002181 ... P10664 28112732
    5 5h4p:D (3.07) BS01 rna ? GO:0000027 ... P26321 28112732
    6 5h4p:D (3.07) BS02 rna ? GO:0000027 ... P26321 28112732
    7 5h4p:E (3.07) BS01 rna ? GO:0000027 ... Q02326 28112732
    8 5h4p:F (3.07) BS01 rna ? GO:0000463 ... P05737 28112732
    9 5h4p:F (3.07) BS02 rna ? GO:0000463 ... P05737 28112732
    10 5h4p:G (3.07) BS01 rna ? GO:0000470 ... P17076 28112732
    11 5h4p:G (3.07) BS02 rna ? GO:0000470 ... P17076 28112732
    12 5h4p:H (3.07) BS01 rna ? GO:0002181 ... P05738 28112732
    13 5h4p:J (3.07) BS01 rna ? GO:0000027 ... P0C0W9 28112732
    14 5h4p:J (3.07) BS02 rna ? GO:0000027 ... P0C0W9 28112732
    15 5h4p:L (3.07) BS01 rna ? GO:0002181 ... Q12690 28112732
    16 5h4p:L (3.07) BS02 rna ? GO:0002181 ... Q12690 28112732
    17 5h4p:M (3.07) BS01 rna ? GO:0000027 ... P36105 28112732
    18 5h4p:N (3.07) BS01 rna ? GO:0002181 ... P05748 28112732
    19 5h4p:N (3.07) BS02 rna ? GO:0002181 ... P05748 28112732
    20 5h4p:O (3.07) BS01 rna ? GO:0000470 ... P26784 28112732
    21 5h4p:P (3.07) BS01 rna ? GO:0000448 ... P05740 28112732
    22 5h4p:P (3.07) BS02 rna ? GO:0000448 ... P05740 28112732
    23 5h4p:Q (3.07) BS01 rna ? GO:0002181 ... P0CX49 28112732
    24 5h4p:R (3.07) BS01 rna ? GO:0002181 ... P0CX82 28112732
    25 5h4p:S (3.07) BS01 rna ? GO:0002181 ... P0CX23 28112732
    26 5h4p:S (3.07) BS02 rna ? GO:0002181 ... P0CX23 28112732
    27 5h4p:T (3.07) BS01 rna ? GO:0002181 ... Q02753 28112732
    28 5h4p:T (3.07) BS02 rna ? GO:0002181 ... Q02753 28112732
    29 5h4p:U (3.07) BS01 rna ? GO:0002181 ... P05749 28112732
    30 5h4p:V (3.07) BS01 rna ? GO:0002181 ... P0CX41 28112732
    31 5h4p:W (3.07) BS01 rna ? GO:0002181 ... P04449 28112732
    32 5h4p:X (3.07) BS01 rna ? GO:0000027 ... P04456 28112732
    33 5h4p:X (3.07) BS02 rna ? GO:0000027 ... P04456 28112732
    34 5h4p:Y (3.07) BS01 rna ? GO:0002181 ... P05743 28112732
    35 5h4p:Y (3.07) BS02 rna ? GO:0002181 ... P05743 28112732
    36 5h4p:Z (3.07) BS01 rna ? GO:0002181 ... P0C2H6 28112732
    37 5h4p:a (3.07) BS01 rna ? GO:0002181 ... P02406 28112732
    38 5h4p:b (3.07) BS01 rna ? GO:0002181 ... P05747 28112732
    39 5h4p:c (3.07) BS01 rna ? GO:0002181 ... P14120 28112732
    40 5h4p:d (3.07) BS01 rna ? GO:0002181 ... P0C2H8 28112732
    41 5h4p:e (3.07) BS01 rna ? GO:0002181 ... P38061 28112732
    42 5h4p:f (3.07) BS01 rna ? GO:0000027 ... P05744 28112732
    43 5h4p:g (3.07) BS01 rna ? GO:0002181 ... P87262 28112732
    44 5h4p:h (3.07) BS01 rna ? GO:0000463 ... P0CX84 28112732
    45 5h4p:h (3.07) BS02 rna ? GO:0000463 ... P0CX84 28112732
    46 5h4p:i (3.07) BS01 rna ? GO:0002181 ... P05745 28112732
    47 5h4p:j (3.07) BS01 rna ? GO:0000448 ... P49166 28112732
    48 5h4p:j (3.07) BS02 rna ? GO:0000448 ... P49166 28112732
    49 5h4p:k (3.07) BS01 rna ? GO:0002181 ... P49167 28112732
    50 5h4p:l (3.07) BS01 rna ? GO:0002181 ... P04650 28112732
    51 5h4p:l (3.07) BS02 rna ? GO:0002181 ... P04650 28112732
    52 5h4p:o (3.07) BS01 rna ? GO:0002181 ... P0CX27 28112732
    53 5h4p:p (3.07) BS01 rna ? GO:0002181 ... P0CX25 28112732
    54 5h4p:w (3.07) BS01 rna ? GO:0043023 ... P38861 28112732
    55 5h4p:y (3.07) BS01 rna ? GO:0000054 ... Q12522 28112732
    56 5h4p:z (3.07) BS01 rna ? N/A Q06709 28112732
    57 5h4p:z (3.07) BS02 rna ? N/A Q06709 28112732
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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