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BioLiP
Download all results in tab-seperated text for 19 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5elf:A (1.55) BS01 GLC ? GO:0005515 ... P01556 27082955 PDBbind: -logKd/Ki=2.34, Kd=4.57mM
    2 5elf:A (1.55) BS02 GAL ? GO:0005515 ... P01556 27082955 PDBbind: -logKd/Ki=2.34, Kd=4.57mM
    3 5elf:A (1.55) BS03 FUC ? GO:0005515 ... P01556 27082955 PDBbind: -logKd/Ki=2.34, Kd=4.57mM
    4 5elf:B (1.55) BS01 FUC ? GO:0005515 ... P01556 27082955
    5 5elf:D (1.55) BS01 GAL ? GO:0005515 ... P01556 27082955
    6 5elf:D (1.55) BS02 FUC ? GO:0005515 ... P01556 27082955
    7 5elf:E (1.55) BS01 GLC ? GO:0005515 ... P01556 27082955 PDBbind: -logKd/Ki=2.34, Kd=4.57mM
    8 5elf:E (1.55) BS02 GAL ? GO:0005515 ... P01556 27082955 PDBbind: -logKd/Ki=2.34, Kd=4.57mM
    9 5elf:E (1.55) BS03 FUC ? GO:0005515 ... P01556 27082955 PDBbind: -logKd/Ki=2.34, Kd=4.57mM
    10 5elf:F (1.55) BS01 FUC ? GO:0005515 ... P01556 27082955
    11 5elf:G (1.55) BS01 GAL ? GO:0005515 ... P01556 27082955
    12 5elf:G (1.55) BS02 FUC ? GO:0005515 ... P01556 27082955
    13 5elf:G (1.55) BS03 FUC ? GO:0005515 ... P01556 27082955
    14 5elf:H (1.55) BS01 FUC ? GO:0005515 ... P01556 27082955
    15 5elf:I (1.55) BS01 FUC ? GO:0005515 ... P01556 27082955
    16 5elf:I (1.55) BS02 FUC ? GO:0005515 ... P01556 27082955
    17 5elf:J (1.55) BS01 GAL ? GO:0005515 ... P01556 27082955
    18 5elf:J (1.55) BS02 FUC ? GO:0005515 ... P01556 27082955
    19 5elf:J (1.55) BS03 FUC ? GO:0005515 ... P01556 27082955
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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