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BioLiP
Download all results in tab-seperated text for 122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4v8y:A0 (4.3) BS01 rna ? GO:0000054 ... P39938 24200810
    2 4v8y:A0 (4.3) BS02 ZN ? GO:0000054 ... P39938 24200810
    3 4v8y:A1 (4.3) BS01 rna ? GO:0000028 ... P35997 24200810
    4 4v8y:A2 (4.3) BS01 rna ? GO:0000028 ... Q3E7X9 24200810
    5 4v8y:A3 (4.3) BS01 rna ? GO:0002181 ... P41057 24200810
    6 4v8y:A3 (4.3) BS02 ZN ? GO:0002181 ... P41057 24200810
    7 4v8y:A3 (4.3) BS03 OHX ? GO:0002181 ... P41057 24200810
    8 4v8y:A3 (4.3) BS04 MG ? GO:0002181 ... P41057 24200810
    9 4v8y:A3 (4.3) BS05 MG ? GO:0002181 ... P41057 24200810
    10 4v8y:A4 (4.3) BS01 rna ? GO:0002181 ... P0CX33 24200810
    11 4v8y:A5 (4.3) BS01 rna ? GO:0000028 ... P05759 24200810
    12 4v8y:A5 (4.3) BS02 ZN ? GO:0000028 ... P05759 24200810
    13 4v8y:A6 (4.3) BS01 rna ? GO:0001965 ... P38011 24200810
    14 4v8y:A6 (4.3) BS02 OHX ? GO:0001965 ... P38011 24200810
    15 4v8y:A7 (4.3) BS01 rna ? GO:0000723 ... P39015 24200810
    16 4v8y:A7 (4.3) BS02 rna ? GO:0000723 ... P39015 24200810
    17 4v8y:A7 (4.3) BS03 rna ? GO:0000723 ... P39015 24200810
    18 4v8y:AA (4.3) BS01 rna ? GO:0000028 ... P32905 24200810
    19 4v8y:AB (4.3) BS01 rna ? GO:0000462 ... P33442 24200810
    20 4v8y:AB (4.3) BS02 rna ? GO:0000462 ... P33442 24200810
    21 4v8y:AB (4.3) BS03 OHX ? GO:0000462 ... P33442 24200810
    22 4v8y:AC (4.3) BS01 rna ? GO:0000054 ... P25443 24200810
    23 4v8y:AC (4.3) BS02 OHX ? GO:0000054 ... P25443 24200810
    24 4v8y:AD (4.3) BS01 rna ? GO:0000054 ... P05750 24200810
    25 4v8y:AE (4.3) BS01 rna ? GO:0002181 ... P0CX35 24200810
    26 4v8y:AF (4.3) BS01 rna ? GO:0000028 ... P26783 24200810
    27 4v8y:AG (4.3) BS01 rna ? GO:0000462 ... P0CX37 24200810
    28 4v8y:AH (4.3) BS01 rna ? GO:0002181 ... P26786 24200810
    29 4v8y:AI (4.3) BS01 rna ? GO:0000462 ... P0CX39 24200810
    30 4v8y:AI (4.3) BS02 rna ? GO:0000462 ... P0CX39 24200810
    31 4v8y:AI (4.3) BS03 OHX ? GO:0000462 ... P0CX39 24200810
    32 4v8y:AJ (4.3) BS01 rna ? GO:0000462 ... O13516 24200810
    33 4v8y:AK (4.3) BS01 rna ? GO:0000054 ... Q08745 24200810
    34 4v8y:AL (4.3) BS01 rna ? GO:0000028 ... P0CX47 24200810
    35 4v8y:AL (4.3) BS02 OHX ? GO:0000028 ... P0CX47 24200810
    36 4v8y:AL (4.3) BS03 MG ? GO:0000028 ... P0CX47 24200810
    37 4v8y:AM (4.3) BS01 rna ? GO:0000028 ... P48589 24200810
    38 4v8y:AN (4.3) BS01 rna ? GO:0000462 ... P05756 24200810
    39 4v8y:AN (4.3) BS02 rna ? GO:0000462 ... P05756 24200810
    40 4v8y:AN (4.3) BS03 OHX ? GO:0000462 ... P05756 24200810
    41 4v8y:AO (4.3) BS01 rna ? GO:0000028 ... P06367 24200810
    42 4v8y:AP (4.3) BS01 rna ? GO:0000028 ... Q01855 24200810
    43 4v8y:AP (4.3) BS02 OHX ? GO:0000028 ... Q01855 24200810
    44 4v8y:AQ (4.3) BS01 rna ? GO:0000462 ... P0CX51 24200810
    45 4v8y:AR (4.3) BS01 rna ? GO:0000028 ... P02407 24200810
    46 4v8y:AS (4.3) BS01 rna ? GO:0000054 ... P0CX55 24200810
    47 4v8y:AS (4.3) BS02 MG ? GO:0000054 ... P0CX55 24200810
    48 4v8y:AT (4.3) BS01 rna ? GO:0000028 ... P07280 24200810
    49 4v8y:AU (4.3) BS01 rna ? GO:0000462 ... P38701 24200810
    50 4v8y:AV (4.3) BS01 rna ? GO:0000447 ... P0C0V8 24200810
    51 4v8y:AW (4.3) BS01 rna ? GO:0002181 ... P0C0W1 24200810
    52 4v8y:AX (4.3) BS01 rna ? GO:0000462 ... P0CX29 24200810
    53 4v8y:AY (4.3) BS01 rna ? GO:0000462 ... P0CX31 24200810
    54 4v8y:AZ (4.3) BS01 rna ? GO:0002181 ... Q3E792 24200810
    55 4v8y:BA (4.3) BS01 rna ? GO:0002181 ... P0CX46 24200810
    56 4v8y:BA (4.3) BS02 rna ? GO:0002181 ... P0CX46 24200810
    57 4v8y:BB (4.3) BS01 rna ? GO:0000027 ... P14126 24200810
    58 4v8y:BC (4.3) BS01 rna ? GO:0002181 ... P10664 24200810
    59 4v8y:BC (4.3) BS02 rna ? GO:0002181 ... P10664 24200810
    60 4v8y:BD (4.3) BS01 rna ? GO:0000027 ... P26321 24200810
    61 4v8y:BD (4.3) BS02 rna ? GO:0000027 ... P26321 24200810
    62 4v8y:BE (4.3) BS01 rna ? GO:0000027 ... Q02326 24200810
    63 4v8y:BF (4.3) BS01 rna ? GO:0000463 ... P05737 24200810
    64 4v8y:BF (4.3) BS02 rna ? GO:0000463 ... P05737 24200810
    65 4v8y:BG (4.3) BS01 rna ? GO:0000470 ... P17076 24200810
    66 4v8y:BG (4.3) BS02 rna ? GO:0000470 ... P17076 24200810
    67 4v8y:BH (4.3) BS01 rna ? GO:0002181 ... P05738 24200810
    68 4v8y:BI (4.3) BS01 rna ? GO:0000027 ... P41805 24200810
    69 4v8y:BI (4.3) BS02 rna ? GO:0000027 ... P41805 24200810
    70 4v8y:BJ (4.3) BS01 rna ? GO:0000027 ... P0C0W9 24200810
    71 4v8y:BJ (4.3) BS02 rna ? GO:0000027 ... P0C0W9 24200810
    72 4v8y:BK (4.3) BS01 rna N/A N/A N/A 24200810
    73 4v8y:BL (4.3) BS01 rna ? GO:0002181 ... Q12690 24200810
    74 4v8y:BL (4.3) BS02 rna ? GO:0002181 ... Q12690 24200810
    75 4v8y:BM (4.3) BS01 rna ? GO:0000027 ... P38754 24200810
    76 4v8y:BN (4.3) BS01 rna ? GO:0002181 ... P05748 24200810
    77 4v8y:BN (4.3) BS02 rna ? GO:0002181 ... P05748 24200810
    78 4v8y:BO (4.3) BS01 rna ? GO:0000470 ... P26784 24200810
    79 4v8y:BP (4.3) BS01 rna ? GO:0000448 ... P05740 24200810
    80 4v8y:BP (4.3) BS02 rna ? GO:0000448 ... P05740 24200810
    81 4v8y:BQ (4.3) BS01 rna ? GO:0002181 ... P0CX49 24200810
    82 4v8y:BR (4.3) BS01 rna ? GO:0002181 ... P0CX83 24200810
    83 4v8y:BR (4.3) BS02 rna ? GO:0002181 ... P0CX83 24200810
    84 4v8y:BR (4.3) BS03 OHX ? GO:0002181 ... P0CX83 24200810
    85 4v8y:BS (4.3) BS01 rna ? GO:0002181 ... P0CX24 24200810
    86 4v8y:BS (4.3) BS02 rna ? GO:0002181 ... P0CX24 24200810
    87 4v8y:BT (4.3) BS01 rna ? GO:0002181 ... Q02753 24200810
    88 4v8y:BU (4.3) BS01 rna ? GO:0002181 ... P05749 24200810
    89 4v8y:BV (4.3) BS01 rna ? GO:0002181 ... P0CX41 24200810
    90 4v8y:BV (4.3) BS02 rna ? GO:0002181 ... P0CX41 24200810
    91 4v8y:BW (4.3) BS01 rna ? GO:0002181 ... P04449 24200810
    92 4v8y:BX (4.3) BS01 rna ? GO:0000027 ... P04456 24200810
    93 4v8y:BX (4.3) BS02 rna ? GO:0000027 ... P04456 24200810
    94 4v8y:BY (4.3) BS01 rna ? GO:0002181 ... P05743 24200810
    95 4v8y:BY (4.3) BS02 rna ? GO:0002181 ... P05743 24200810
    96 4v8y:BZ (4.3) BS01 rna ? GO:0002181 ... P0C2H6 24200810
    97 4v8y:Ba (4.3) BS01 rna ? GO:0002181 ... P02406 24200810
    98 4v8y:Bb (4.3) BS01 rna ? GO:0002181 ... P05747 24200810
    99 4v8y:Bc (4.3) BS01 rna ? GO:0002181 ... P14120 24200810
    100 4v8y:Bd (4.3) BS01 rna ? GO:0002181 ... P0C2H8 24200810
    101 4v8y:Be (4.3) BS01 rna ? GO:0002181 ... P38061 24200810
    102 4v8y:Bf (4.3) BS01 rna ? GO:0000027 ... P05744 24200810
    103 4v8y:Bg (4.3) BS01 rna ? GO:0002181 ... P87262 24200810
    104 4v8y:Bh (4.3) BS01 rna ? GO:0000463 ... P0CX85 24200810
    105 4v8y:Bh (4.3) BS02 rna ? GO:0000463 ... P0CX85 24200810
    106 4v8y:Bi (4.3) BS01 rna ? GO:0002181 ... P05745 24200810
    107 4v8y:Bj (4.3) BS01 rna ? GO:0000448 ... P49166 24200810
    108 4v8y:Bj (4.3) BS02 rna ? GO:0000448 ... P49166 24200810
    109 4v8y:Bj (4.3) BS03 ZN ? GO:0000448 ... P49166 24200810
    110 4v8y:Bk (4.3) BS01 rna ? GO:0002181 ... P49167 24200810
    111 4v8y:Bl (4.3) BS01 rna ? GO:0002181 ... P04650 24200810
    112 4v8y:Bl (4.3) BS02 rna ? GO:0002181 ... P04650 24200810
    113 4v8y:Bm (4.3) BS01 rna ? GO:0000027 ... P0CH08 24200810
    114 4v8y:Bm (4.3) BS02 ZN ? GO:0000027 ... P0CH08 24200810
    115 4v8y:Bo (4.3) BS01 rna ? GO:0002181 ... P0CX27 24200810
    116 4v8y:Bo (4.3) BS02 rna ? GO:0002181 ... P0CX27 24200810
    117 4v8y:Bq (4.3) BS01 rna ? GO:0000027 ... P05317 24200810
    118 4v8y:By (4.3) BS01 rna N/A GO:0003723 ... N/A 24200810
    119 4v8y:By (4.3) BS02 rna N/A GO:0003723 ... N/A 24200810
    120 4v8y:CL (4.3) BS01 rna N/A GO:0003723 ... N/A 24200810
    121 4v8y:CP (4.3) BS01 rna 3.6.5.3 GO:0003924 ... P39730 24200810
    122 4v8y:CP (4.3) BS02 rna 3.6.5.3 GO:0003924 ... P39730 24200810
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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