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BioLiP
Download all results in tab-seperated text for 70 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4v85:AB (3.2) BS01 rna ? GO:0000028 ... P0A7V0 22187675
    2 4v85:AC (3.2) BS01 rna ? GO:0000028 ... P0A7V3 22187675
    3 4v85:AC (3.2) BS02 MG ? GO:0000028 ... P0A7V3 22187675
    4 4v85:AD (3.2) BS01 rna ? GO:0000028 ... P0A7V8 22187675
    5 4v85:AE (3.2) BS01 rna ? GO:0000028 ... P0A7W1 22187675
    6 4v85:AF (3.2) BS01 rna ? GO:0002181 ... P02358 22187675
    7 4v85:AG (3.2) BS01 rna ? GO:0003723 ... P02359 22187675
    8 4v85:AH (3.2) BS01 rna ? GO:0000028 ... P0A7W7 22187675
    9 4v85:AI (3.2) BS01 rna ? GO:0000049 ... P0A7X3 22187675
    10 4v85:AJ (3.2) BS01 rna ? GO:0000049 ... P0A7R5 22187675
    11 4v85:AK (3.2) BS01 rna ? GO:0002181 ... P0A7R9 22187675
    12 4v85:AL (3.2) BS01 rna ? GO:0000049 ... P0A7S3 22187675
    13 4v85:AL (3.2) BS02 MG ? GO:0000049 ... P0A7S3 22187675
    14 4v85:AL (3.2) BS03 MG ? GO:0000049 ... P0A7S3 22187675
    15 4v85:AM (3.2) BS01 rna ? GO:0000049 ... P0A7S9 22187675
    16 4v85:AN (3.2) BS01 rna ? GO:0000028 ... P0AG59 22187675
    17 4v85:AO (3.2) BS01 rna ? GO:0000028 ... P0ADZ4 22187675
    18 4v85:AO (3.2) BS02 rna ? GO:0000028 ... P0ADZ4 22187675
    19 4v85:AP (3.2) BS01 rna ? GO:0000028 ... P0A7T3 22187675
    20 4v85:AQ (3.2) BS01 rna ? GO:0000028 ... P0AG63 22187675
    21 4v85:AR (3.2) BS01 rna ? GO:0002181 ... P0A7T7 22187675
    22 4v85:AS (3.2) BS01 rna ? GO:0000028 ... P0A7U3 22187675
    23 4v85:AT (3.2) BS01 rna ? GO:0000028 ... P0A7U7 22187675
    24 4v85:AU (3.2) BS01 rna ? GO:0000028 ... P68679 22187675
    25 4v85:AW (3.2) BS01 rna ? GO:0003924 ... P0A7I4 22187675
    26 4v85:AW (3.2) BS02 rna ? GO:0003924 ... P0A7I4 22187675
    27 4v85:AW (3.2) BS03 MG ? GO:0003924 ... P0A7I4 22187675
    28 4v85:AW (3.2) BS04 GNP ? GO:0003924 ... P0A7I4 22187675
    29 4v85:B0 (3.2) BS01 rna ? GO:0000027 ... P0A7L8 22187675
    30 4v85:B0 (3.2) BS02 MG ? GO:0000027 ... P0A7L8 22187675
    31 4v85:B1 (3.2) BS01 rna ? GO:0000027 ... P0A7M2 22187675
    32 4v85:B2 (3.2) BS01 rna ? GO:0000027 ... P0A7M6 22187675
    33 4v85:B3 (3.2) BS01 rna ? GO:0000027 ... P0AG51 22187675
    34 4v85:B3 (3.2) BS02 rna ? GO:0000027 ... P0AG51 22187675
    35 4v85:B4 (3.2) BS01 rna ? GO:0000027 ... P0A7N4 22187675
    36 4v85:B5 (3.2) BS01 rna ? GO:0000027 ... P0A7N9 22187675
    37 4v85:B6 (3.2) BS01 rna ? GO:0002181 ... P0A7P5 22187675
    38 4v85:B7 (3.2) BS01 rna ? GO:0002181 ... P0A7Q1 22187675
    39 4v85:B8 (3.2) BS01 rna ? GO:0002181 ... P0A7Q6 22187675
    40 4v85:BC (3.2) BS01 rna ? GO:0000027 ... P60422 22187675
    41 4v85:BD (3.2) BS01 rna ? GO:0000027 ... P60438 22187675
    42 4v85:BD (3.2) BS02 MG ? GO:0000027 ... P60438 22187675
    43 4v85:BE (3.2) BS01 rna ? GO:0001070 ... P60723 22187675
    44 4v85:BE (3.2) BS02 MG ? GO:0001070 ... P60723 22187675
    45 4v85:BF (3.2) BS01 rna ? GO:0000027 ... P62399 22187675
    46 4v85:BF (3.2) BS02 rna ? GO:0000027 ... P62399 22187675
    47 4v85:BG (3.2) BS01 rna ? GO:0000027 ... P0AG55 22187675
    48 4v85:BH (3.2) BS01 rna ? GO:0002181 ... P0A7J3 22187675
    49 4v85:BH (3.2) BS02 MG ? GO:0002181 ... P0A7J3 22187675
    50 4v85:BI (3.2) BS01 rna ? GO:0000027 ... P0A7J7 22187675
    51 4v85:BN (3.2) BS01 rna ? GO:0002181 ... P0AA10 22187675
    52 4v85:BO (3.2) BS01 rna ? GO:0002181 ... P0ADY3 22187675
    53 4v85:BO (3.2) BS02 rna ? GO:0002181 ... P0ADY3 22187675
    54 4v85:BP (3.2) BS01 rna ? GO:0002181 ... P02413 22187675
    55 4v85:BQ (3.2) BS01 rna ? GO:0000027 ... P0ADY7 22187675
    56 4v85:BQ (3.2) BS02 rna ? GO:0000027 ... P0ADY7 22187675
    57 4v85:BQ (3.2) BS03 MG ? GO:0000027 ... P0ADY7 22187675
    58 4v85:BR (3.2) BS01 rna ? GO:0000027 ... P0AG44 22187675
    59 4v85:BR (3.2) BS02 MG ? GO:0000027 ... P0AG44 22187675
    60 4v85:BS (3.2) BS01 rna ? GO:0002181 ... P0C018 22187675
    61 4v85:BS (3.2) BS02 rna ? GO:0002181 ... P0C018 22187675
    62 4v85:BT (3.2) BS01 rna ? GO:0000027 ... P0A7K6 22187675
    63 4v85:BT (3.2) BS02 rna ? GO:0000027 ... P0A7K6 22187675
    64 4v85:BU (3.2) BS01 rna ? GO:0000027 ... P0A7L3 22187675
    65 4v85:BV (3.2) BS01 rna ? GO:0002181 ... P0AG48 22187675
    66 4v85:BW (3.2) BS01 rna ? GO:0002181 ... P61175 22187675
    67 4v85:BX (3.2) BS01 rna ? GO:0000027 ... P0ADZ0 22187675
    68 4v85:BY (3.2) BS01 rna ? GO:0000027 ... P60624 22187675
    69 4v85:BZ (3.2) BS01 rna ? GO:0000027 ... P68919 22187675
    70 4v85:BZ (3.2) BS02 rna ? GO:0000027 ... P68919 22187675
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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