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BioLiP
Download all results in tab-seperated text for 62 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4v7i:A0 (9.6) BS01 rna ? GO:0000027 ... P0A7N4 19913480
    2 4v7i:A1 (9.6) BS01 rna ? GO:0000027 ... P0A7N9 19913480
    3 4v7i:A2 (9.6) BS01 rna ? GO:0002181 ... P0A7P5 19913480
    4 4v7i:A3 (9.6) BS01 rna ? GO:0002181 ... P0A7Q1 19913480
    5 4v7i:A4 (9.6) BS01 rna ? GO:0002181 ... P0A7Q6 19913480
    6 4v7i:A5 (9.6) BS01 rna ? GO:0000027 ... P0A7L0 19913480
    7 4v7i:A6 (9.6) BS01 rna ? GO:0000027 ... P60422 19913480
    8 4v7i:A6 (9.6) BS02 rna ? GO:0000027 ... P60422 19913480
    9 4v7i:AA (9.6) BS01 rna N/A GO:0015031 ... N/A 19913480
    10 4v7i:AD (9.6) BS01 rna ? GO:0000027 ... P60438 19913480
    11 4v7i:AE (9.6) BS01 rna ? GO:0001070 ... P60723 19913480
    12 4v7i:AF (9.6) BS01 rna ? GO:0000027 ... P62399 19913480
    13 4v7i:AF (9.6) BS02 rna ? GO:0000027 ... P62399 19913480
    14 4v7i:AG (9.6) BS01 rna ? GO:0000027 ... P0AG55 19913480
    15 4v7i:AH (9.6) BS01 rna ? GO:0002181 ... P0A7R1 19913480
    16 4v7i:AI (9.6) BS01 rna ? GO:0000027 ... P0A7J7 19913480
    17 4v7i:AJ (9.6) BS01 rna ? GO:0002181 ... P0AA10 19913480
    18 4v7i:AK (9.6) BS01 rna ? GO:0002181 ... P0ADY3 19913480
    19 4v7i:AK (9.6) BS02 rna ? GO:0002181 ... P0ADY3 19913480
    20 4v7i:AL (9.6) BS01 rna ? GO:0002181 ... P02413 19913480
    21 4v7i:AM (9.6) BS01 rna ? GO:0000027 ... P0ADY7 19913480
    22 4v7i:AM (9.6) BS02 rna ? GO:0000027 ... P0ADY7 19913480
    23 4v7i:AN (9.6) BS01 rna ? GO:0000027 ... P0AG44 19913480
    24 4v7i:AO (9.6) BS01 rna ? GO:0002181 ... P0C018 19913480
    25 4v7i:AO (9.6) BS02 rna ? GO:0002181 ... P0C018 19913480
    26 4v7i:AP (9.6) BS01 rna ? GO:0000027 ... P0A7K6 19913480
    27 4v7i:AP (9.6) BS02 rna ? GO:0000027 ... P0A7K6 19913480
    28 4v7i:AQ (9.6) BS01 rna ? GO:0000027 ... P0A7L3 19913480
    29 4v7i:AR (9.6) BS01 rna ? GO:0002181 ... P0AG48 19913480
    30 4v7i:AS (9.6) BS01 rna ? GO:0002181 ... P61175 19913480
    31 4v7i:AT (9.6) BS01 rna ? GO:0000027 ... P0ADZ0 19913480
    32 4v7i:AU (9.6) BS01 rna ? GO:0000027 ... P60624 19913480
    33 4v7i:AV (9.6) BS01 rna ? GO:0000027 ... P68919 19913480
    34 4v7i:AV (9.6) BS02 rna ? GO:0000027 ... P68919 19913480
    35 4v7i:AW (9.6) BS01 rna ? GO:0000027 ... P0A7L8 19913480
    36 4v7i:AW (9.6) BS02 rna ? GO:0000027 ... P0A7L8 19913480
    37 4v7i:AX (9.6) BS01 rna ? GO:0000027 ... P0A7M2 19913480
    38 4v7i:AY (9.6) BS01 rna ? GO:0000027 ... P0A7M6 19913480
    39 4v7i:AZ (9.6) BS01 rna ? GO:0000027 ... P0AG51 19913480
    40 4v7i:AZ (9.6) BS02 rna ? GO:0000027 ... P0AG51 19913480
    41 4v7i:BB (9.6) BS01 rna ? GO:0000028 ... P0A7V0 19913480
    42 4v7i:BC (9.6) BS01 rna ? GO:0000028 ... P0A7V3 19913480
    43 4v7i:BD (9.6) BS01 rna ? GO:0000028 ... P0A7V8 19913480
    44 4v7i:BE (9.6) BS01 rna ? GO:0000028 ... P0A7W1 19913480
    45 4v7i:BF (9.6) BS01 rna ? GO:0002181 ... P02358 19913480
    46 4v7i:BG (9.6) BS01 rna ? GO:0000028 ... P02359 19913480
    47 4v7i:BH (9.6) BS01 rna ? GO:0000028 ... P0A7W7 19913480
    48 4v7i:BI (9.6) BS01 rna ? GO:0000049 ... P0A7X3 19913480
    49 4v7i:BJ (9.6) BS01 rna ? GO:0000049 ... P0A7R5 19913480
    50 4v7i:BK (9.6) BS01 rna ? GO:0002181 ... P0A7R9 19913480
    51 4v7i:BL (9.6) BS01 rna ? GO:0000049 ... P0A7S3 19913480
    52 4v7i:BM (9.6) BS01 rna ? GO:0000049 ... P0A7S9 19913480
    53 4v7i:BM (9.6) BS02 rna ? GO:0000049 ... P0A7S9 19913480
    54 4v7i:BN (9.6) BS01 rna ? GO:0000028 ... P0AG59 19913480
    55 4v7i:BO (9.6) BS01 rna ? GO:0003735 ... Q8X9M2 19913480
    56 4v7i:BO (9.6) BS02 rna ? GO:0003735 ... Q8X9M2 19913480
    57 4v7i:BP (9.6) BS01 rna ? GO:0000028 ... P0A7T3 19913480
    58 4v7i:BQ (9.6) BS01 rna ? GO:0000028 ... P0AG63 19913480
    59 4v7i:BR (9.6) BS01 rna ? GO:0002181 ... P0A7T7 19913480
    60 4v7i:BS (9.6) BS01 rna ? GO:0000028 ... P0A7U3 19913480
    61 4v7i:BT (9.6) BS01 rna ? GO:0000028 ... P0A7U7 19913480
    62 4v7i:BU (9.6) BS01 rna ? GO:0000028 ... P68679 19913480
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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