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BioLiP
Download all results in tab-seperated text for 64 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4v7d:A1 (7.6) BS01 rna ? GO:0000027 ... P0A7M2 24324137
    2 4v7d:A2 (7.6) BS01 rna ? GO:0000027 ... P0A7M6 24324137
    3 4v7d:A3 (7.6) BS01 rna ? GO:0000027 ... P0AG51 24324137
    4 4v7d:A3 (7.6) BS02 rna ? GO:0000027 ... P0AG51 24324137
    5 4v7d:A4 (7.6) BS01 rna ? GO:0000027 ... P0A7N4 24324137
    6 4v7d:A5 (7.6) BS01 rna ? GO:0000027 ... P0A7N9 24324137
    7 4v7d:A6 (7.6) BS01 rna ? GO:0002181 ... P0A7P5 24324137
    8 4v7d:A7 (7.6) BS01 rna ? GO:0002181 ... P0A7Q1 24324137
    9 4v7d:A8 (7.6) BS01 rna ? GO:0002181 ... P0A7Q6 24324137
    10 4v7d:A8 (7.6) BS02 ZN ? GO:0002181 ... P0A7Q6 24324137
    11 4v7d:AC (7.6) BS01 rna ? GO:0000027 ... P0A7L0 24324137
    12 4v7d:AD (7.6) BS01 rna ? GO:0000027 ... P60422 24324137
    13 4v7d:AD (7.6) BS02 rna ? GO:0000027 ... P60422 24324137
    14 4v7d:AE (7.6) BS01 rna ? GO:0000027 ... P60438 24324137
    15 4v7d:AF (7.6) BS01 rna ? GO:0001070 ... P60723 24324137
    16 4v7d:AG (7.6) BS01 rna ? GO:0000027 ... P62399 24324137
    17 4v7d:AG (7.6) BS02 rna ? GO:0000027 ... P62399 24324137
    18 4v7d:AH (7.6) BS01 rna ? GO:0000027 ... P0AG55 24324137
    19 4v7d:AI (7.6) BS01 rna ? GO:0002181 ... P0A7R1 24324137
    20 4v7d:AJ (7.6) BS01 rna ? GO:0002181 ... P0A7J3 24324137
    21 4v7d:AK (7.6) BS01 rna ? GO:0000027 ... P0A7J7 24324137
    22 4v7d:AM (7.6) BS01 rna ? GO:0002181 ... P0AA10 24324137
    23 4v7d:AN (7.6) BS01 rna ? GO:0002181 ... P0ADY3 24324137
    24 4v7d:AN (7.6) BS02 rna ? GO:0002181 ... P0ADY3 24324137
    25 4v7d:AO (7.6) BS01 rna ? GO:0002181 ... P02413 24324137
    26 4v7d:AP (7.6) BS01 rna ? GO:0000027 ... P0ADY7 24324137
    27 4v7d:AP (7.6) BS02 rna ? GO:0000027 ... P0ADY7 24324137
    28 4v7d:AQ (7.6) BS01 rna ? GO:0000027 ... P0AG44 24324137
    29 4v7d:AR (7.6) BS01 rna ? GO:0002181 ... P0C018 24324137
    30 4v7d:AR (7.6) BS02 rna ? GO:0002181 ... P0C018 24324137
    31 4v7d:AS (7.6) BS01 rna ? GO:0000027 ... P0A7K6 24324137
    32 4v7d:AS (7.6) BS02 rna ? GO:0000027 ... P0A7K6 24324137
    33 4v7d:AT (7.6) BS01 rna ? GO:0000027 ... P0A7L3 24324137
    34 4v7d:AU (7.6) BS01 rna ? GO:0002181 ... P0AG48 24324137
    35 4v7d:AV (7.6) BS01 rna ? GO:0002181 ... P61175 24324137
    36 4v7d:AW (7.6) BS01 rna ? GO:0000027 ... P0ADZ0 24324137
    37 4v7d:AX (7.6) BS01 rna ? GO:0000027 ... P60624 24324137
    38 4v7d:AY (7.6) BS01 rna ? GO:0000027 ... P68919 24324137
    39 4v7d:AY (7.6) BS02 rna ? GO:0000027 ... P68919 24324137
    40 4v7d:AZ (7.6) BS01 rna ? GO:0000027 ... P0A7L8 24324137
    41 4v7d:AZ (7.6) BS02 rna ? GO:0000027 ... P0A7L8 24324137
    42 4v7d:BB (7.6) BS01 rna ? GO:0000028 ... P0A7V0 24324137
    43 4v7d:BC (7.6) BS01 rna ? GO:0000028 ... P0A7V3 24324137
    44 4v7d:BD (7.6) BS01 rna ? GO:0000028 ... P0A7V8 24324137
    45 4v7d:BE (7.6) BS01 rna ? GO:0000028 ... P0A7W1 24324137
    46 4v7d:BF (7.6) BS01 rna ? GO:0002181 ... P02358 24324137
    47 4v7d:BG (7.6) BS01 rna ? GO:0000028 ... P02359 24324137
    48 4v7d:BH (7.6) BS01 rna ? GO:0000028 ... P0A7W7 24324137
    49 4v7d:BI (7.6) BS01 rna ? GO:0000049 ... P0A7X3 24324137
    50 4v7d:BJ (7.6) BS01 rna ? GO:0000049 ... P0A7R5 24324137
    51 4v7d:BK (7.6) BS01 rna ? GO:0002181 ... P0A7R9 24324137
    52 4v7d:BL (7.6) BS01 rna ? GO:0000049 ... P0A7S3 24324137
    53 4v7d:BM (7.6) BS01 rna ? GO:0000049 ... P0A7S9 24324137
    54 4v7d:BN (7.6) BS01 rna ? GO:0000028 ... P0AG59 24324137
    55 4v7d:BO (7.6) BS01 rna ? GO:0000028 ... P0ADZ4 24324137
    56 4v7d:BO (7.6) BS02 rna ? GO:0000028 ... P0ADZ4 24324137
    57 4v7d:BP (7.6) BS01 rna ? GO:0000028 ... P0A7T3 24324137
    58 4v7d:BQ (7.6) BS01 rna ? GO:0000028 ... P0AG63 24324137
    59 4v7d:BR (7.6) BS01 rna ? GO:0002181 ... P0A7T7 24324137
    60 4v7d:BS (7.6) BS01 rna ? GO:0000028 ... P0A7U3 24324137
    61 4v7d:BT (7.6) BS01 rna ? GO:0000028 ... P0A7U7 24324137
    62 4v7d:BU (7.6) BS01 rna ? GO:0000028 ... P68679 24324137
    63 4v7d:BZ (7.6) BS01 rna 3.6.5.- GO:0003746 ... P0A6M8 24324137
    64 4v7d:BZ (7.6) BS02 rna 3.6.5.- GO:0003746 ... P0A6M8 24324137
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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