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BioLiP
Download all results in tab-seperated text for 144 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4v5q:AB (3.1) BS01 rna ? GO:0003735 ... P80371 21378964
    2 4v5q:AC (3.1) BS01 rna ? GO:0003676 ... P80372 21378964
    3 4v5q:AD (3.1) BS01 rna ? GO:0003723 ... P80373 21378964
    4 4v5q:AD (3.1) BS02 ZN ? GO:0003723 ... P80373 21378964
    5 4v5q:AE (3.1) BS01 rna ? GO:0003723 ... Q5SHQ5 21378964
    6 4v5q:AF (3.1) BS01 rna ? GO:0003735 ... Q5SLP8 21378964
    7 4v5q:AG (3.1) BS01 rna ? GO:0000028 ... P17291 21378964
    8 4v5q:AG (3.1) BS02 rna ? GO:0000028 ... P17291 21378964
    9 4v5q:AH (3.1) BS01 rna N/A GO:0003735 ... N/A 21378964
    10 4v5q:AI (3.1) BS01 rna ? GO:0000049 ... P80374 21378964
    11 4v5q:AJ (3.1) BS01 rna ? GO:0000049 ... Q5SHN7 21378964
    12 4v5q:AK (3.1) BS01 rna ? GO:0003735 ... P80376 21378964
    13 4v5q:AL (3.1) BS01 rna ? GO:0000049 ... Q5SHN3 21378964
    14 4v5q:AM (3.1) BS01 rna ? GO:0000049 ... P80377 21378964
    15 4v5q:AM (3.1) BS02 rna ? GO:0000049 ... P80377 21378964
    16 4v5q:AN (3.1) BS01 rna N/A GO:0003735 ... N/A 21378964
    17 4v5q:AN (3.1) BS02 ZN N/A GO:0003735 ... N/A 21378964
    18 4v5q:AO (3.1) BS01 rna ? GO:0003735 ... Q5SJ76 21378964
    19 4v5q:AO (3.1) BS02 rna ? GO:0003735 ... Q5SJ76 21378964
    20 4v5q:AP (3.1) BS01 rna ? GO:0003735 ... Q5SJH3 21378964
    21 4v5q:AQ (3.1) BS01 rna N/A GO:0003735 ... N/A 21378964
    22 4v5q:AR (3.1) BS01 rna ? GO:0003735 ... Q5SLQ0 21378964
    23 4v5q:AS (3.1) BS01 rna ? GO:0000028 ... Q5SHP2 21378964
    24 4v5q:AT (3.1) BS01 rna ? GO:0003723 ... P80380 21378964
    25 4v5q:AZ (3.1) BS01 rna ? GO:0003723 ... Q5SHN6 21378964
    26 4v5q:AZ (3.1) BS02 rna ? GO:0003723 ... Q5SHN6 21378964
    27 4v5q:AZ (3.1) BS03 GDP ? GO:0003723 ... Q5SHN6 21378964
    28 4v5q:AZ (3.1) BS04 KIR ? GO:0003723 ... Q5SHN6 21378964
    29 4v5q:B0 (3.1) BS01 rna ? GO:0003735 ... P60493 21378964
    30 4v5q:B0 (3.1) BS02 rna ? GO:0003735 ... P60493 21378964
    31 4v5q:B1 (3.1) BS01 rna ? GO:0003735 ... P60494 21378964
    32 4v5q:B2 (3.1) BS01 rna ? GO:0003735 ... Q5SHP6 21378964
    33 4v5q:B3 (3.1) BS01 rna ? GO:0003735 ... Q5SHQ6 21378964
    34 4v5q:B3 (3.1) BS02 rna ? GO:0003735 ... Q5SHQ6 21378964
    35 4v5q:B4 (3.1) BS01 ZN ? GO:0003735 ... Q5SJE1 21378964
    36 4v5q:B5 (3.1) BS01 rna ? GO:0003735 ... P80339 21378964
    37 4v5q:B6 (3.1) BS01 rna ? GO:0000049 ... P35871 21378964
    38 4v5q:B7 (3.1) BS01 rna ? GO:0003735 ... P80340 21378964
    39 4v5q:B8 (3.1) BS01 rna ? GO:0003735 ... Q5SKU1 21378964
    40 4v5q:B9 (3.1) BS01 rna ? GO:0003735 ... Q5SHR2 21378964
    41 4v5q:B9 (3.1) BS02 ZN ? GO:0003735 ... Q5SHR2 21378964
    42 4v5q:BC (3.1) BS01 rna ? GO:0000049 ... Q5SLP7 21378964
    43 4v5q:BC (3.1) BS02 rna ? GO:0000049 ... Q5SLP7 21378964
    44 4v5q:BD (3.1) BS01 rna ? GO:0002181 ... P60405 21378964
    45 4v5q:BD (3.1) BS02 rna ? GO:0002181 ... P60405 21378964
    46 4v5q:BE (3.1) BS01 rna ? GO:0003735 ... Q5SHN8 21378964
    47 4v5q:BF (3.1) BS01 rna ? GO:0003735 ... Q5SHN9 21378964
    48 4v5q:BG (3.1) BS01 rna ? GO:0000049 ... Q5SHQ0 21378964
    49 4v5q:BG (3.1) BS02 rna ? GO:0000049 ... Q5SHQ0 21378964
    50 4v5q:BG (3.1) BS03 rna ? GO:0000049 ... Q5SHQ0 21378964
    51 4v5q:BH (3.1) BS01 rna N/A GO:0003735 ... N/A 21378964
    52 4v5q:BJ (3.1) BS01 rna N/A N/A N/A 21378964
    53 4v5q:BK (3.1) BS01 rna N/A N/A N/A 21378964
    54 4v5q:BN (3.1) BS01 rna ? GO:0003729 ... P60488 21378964
    55 4v5q:BO (3.1) BS01 rna ? GO:0003735 ... Q5SHP8 21378964
    56 4v5q:BO (3.1) BS02 rna ? GO:0003735 ... Q5SHP8 21378964
    57 4v5q:BP (3.1) BS01 rna ? GO:0003735 ... Q5SHQ7 21378964
    58 4v5q:BQ (3.1) BS01 rna ? GO:0000049 ... P60489 21378964
    59 4v5q:BQ (3.1) BS02 rna ? GO:0000049 ... P60489 21378964
    60 4v5q:BR (3.1) BS01 rna ? GO:0003735 ... Q9Z9H5 21378964
    61 4v5q:BS (3.1) BS01 rna ? GO:0003735 ... Q5SHQ4 21378964
    62 4v5q:BS (3.1) BS02 rna ? GO:0003735 ... Q5SHQ4 21378964
    63 4v5q:BT (3.1) BS01 rna ? GO:0003735 ... P60490 21378964
    64 4v5q:BT (3.1) BS02 rna ? GO:0003735 ... P60490 21378964
    65 4v5q:BU (3.1) BS01 rna ? GO:0000027 ... P60491 21378964
    66 4v5q:BV (3.1) BS01 rna ? GO:0003723 ... P60492 21378964
    67 4v5q:BW (3.1) BS01 rna ? GO:0003735 ... Q5SHP3 21378964
    68 4v5q:BX (3.1) BS01 rna ? GO:0000027 ... Q5SHP0 21378964
    69 4v5q:BY (3.1) BS01 rna ? GO:0003723 ... Q5SHP9 21378964
    70 4v5q:BZ (3.1) BS01 rna ? GO:0003723 ... Q5SHZ1 21378964
    71 4v5q:BZ (3.1) BS02 rna ? GO:0003723 ... Q5SHZ1 21378964
    72 4v5q:CB (3.1) BS01 rna ? GO:0003735 ... P80371 21378964
    73 4v5q:CC (3.1) BS01 rna ? GO:0003676 ... P80372 21378964
    74 4v5q:CD (3.1) BS01 rna ? GO:0003723 ... P80373 21378964
    75 4v5q:CD (3.1) BS02 ZN ? GO:0003723 ... P80373 21378964
    76 4v5q:CE (3.1) BS01 rna ? GO:0003723 ... Q5SHQ5 21378964
    77 4v5q:CF (3.1) BS01 rna ? GO:0003735 ... Q5SLP8 21378964
    78 4v5q:CG (3.1) BS01 rna ? GO:0000028 ... P17291 21378964
    79 4v5q:CG (3.1) BS02 rna ? GO:0000028 ... P17291 21378964
    80 4v5q:CH (3.1) BS01 rna N/A GO:0003735 ... N/A 21378964
    81 4v5q:CI (3.1) BS01 rna ? GO:0000049 ... P80374 21378964
    82 4v5q:CJ (3.1) BS01 rna ? GO:0000049 ... Q5SHN7 21378964
    83 4v5q:CK (3.1) BS01 rna ? GO:0003735 ... P80376 21378964
    84 4v5q:CL (3.1) BS01 rna ? GO:0000049 ... Q5SHN3 21378964
    85 4v5q:CM (3.1) BS01 rna ? GO:0000049 ... P80377 21378964
    86 4v5q:CM (3.1) BS02 rna ? GO:0000049 ... P80377 21378964
    87 4v5q:CM (3.1) BS03 rna ? GO:0000049 ... P80377 21378964
    88 4v5q:CN (3.1) BS01 rna N/A GO:0003735 ... N/A 21378964
    89 4v5q:CN (3.1) BS02 ZN N/A GO:0003735 ... N/A 21378964
    90 4v5q:CO (3.1) BS01 rna ? GO:0003735 ... Q5SJ76 21378964
    91 4v5q:CO (3.1) BS02 rna ? GO:0003735 ... Q5SJ76 21378964
    92 4v5q:CP (3.1) BS01 rna ? GO:0003735 ... Q5SJH3 21378964
    93 4v5q:CQ (3.1) BS01 rna N/A GO:0003735 ... N/A 21378964
    94 4v5q:CR (3.1) BS01 rna ? GO:0003735 ... Q5SLQ0 21378964
    95 4v5q:CS (3.1) BS01 rna ? GO:0000028 ... Q5SHP2 21378964
    96 4v5q:CT (3.1) BS01 rna ? GO:0003723 ... P80380 21378964
    97 4v5q:CZ (3.1) BS01 rna ? GO:0003723 ... Q5SHN6 21378964
    98 4v5q:CZ (3.1) BS02 rna ? GO:0003723 ... Q5SHN6 21378964
    99 4v5q:CZ (3.1) BS03 rna ? GO:0003723 ... Q5SHN6 21378964
    100 4v5q:CZ (3.1) BS04 GDP ? GO:0003723 ... Q5SHN6 21378964
    101 4v5q:CZ (3.1) BS05 KIR ? GO:0003723 ... Q5SHN6 21378964
    102 4v5q:D0 (3.1) BS01 rna ? GO:0003735 ... P60493 21378964
    103 4v5q:D0 (3.1) BS02 rna ? GO:0003735 ... P60493 21378964
    104 4v5q:D0 (3.1) BS03 rna ? GO:0003735 ... P60493 21378964
    105 4v5q:D1 (3.1) BS01 rna ? GO:0003735 ... P60494 21378964
    106 4v5q:D1 (3.1) BS02 rna ? GO:0003735 ... P60494 21378964
    107 4v5q:D2 (3.1) BS01 rna ? GO:0003735 ... Q5SHP6 21378964
    108 4v5q:D3 (3.1) BS01 rna ? GO:0003735 ... Q5SHQ6 21378964
    109 4v5q:D3 (3.1) BS02 rna ? GO:0003735 ... Q5SHQ6 21378964
    110 4v5q:D5 (3.1) BS01 rna ? GO:0003735 ... P80339 21378964
    111 4v5q:D6 (3.1) BS01 rna ? GO:0000049 ... P35871 21378964
    112 4v5q:D7 (3.1) BS01 rna ? GO:0003735 ... P80340 21378964
    113 4v5q:D8 (3.1) BS01 rna ? GO:0003735 ... Q5SKU1 21378964
    114 4v5q:D9 (3.1) BS01 rna ? GO:0003735 ... Q5SHR2 21378964
    115 4v5q:D9 (3.1) BS02 ZN ? GO:0003735 ... Q5SHR2 21378964
    116 4v5q:DC (3.1) BS01 rna ? GO:0000049 ... Q5SLP7 21378964
    117 4v5q:DC (3.1) BS02 rna ? GO:0000049 ... Q5SLP7 21378964
    118 4v5q:DD (3.1) BS01 rna ? GO:0002181 ... P60405 21378964
    119 4v5q:DE (3.1) BS01 rna ? GO:0003735 ... Q5SHN8 21378964
    120 4v5q:DF (3.1) BS01 rna ? GO:0003735 ... Q5SHN9 21378964
    121 4v5q:DG (3.1) BS01 rna ? GO:0000049 ... Q5SHQ0 21378964
    122 4v5q:DG (3.1) BS02 rna ? GO:0000049 ... Q5SHQ0 21378964
    123 4v5q:DG (3.1) BS03 rna ? GO:0000049 ... Q5SHQ0 21378964
    124 4v5q:DH (3.1) BS01 rna N/A GO:0003735 ... N/A 21378964
    125 4v5q:DJ (3.1) BS01 rna N/A N/A N/A 21378964
    126 4v5q:DK (3.1) BS01 rna N/A N/A N/A 21378964
    127 4v5q:DN (3.1) BS01 rna ? GO:0003729 ... P60488 21378964
    128 4v5q:DO (3.1) BS01 rna ? GO:0003735 ... Q5SHP8 21378964
    129 4v5q:DO (3.1) BS02 rna ? GO:0003735 ... Q5SHP8 21378964
    130 4v5q:DP (3.1) BS01 rna ? GO:0003735 ... Q5SHQ7 21378964
    131 4v5q:DQ (3.1) BS01 rna ? GO:0000049 ... P60489 21378964
    132 4v5q:DQ (3.1) BS02 rna ? GO:0000049 ... P60489 21378964
    133 4v5q:DR (3.1) BS01 rna ? GO:0003735 ... Q9Z9H5 21378964
    134 4v5q:DS (3.1) BS01 rna ? GO:0003735 ... Q5SHQ4 21378964
    135 4v5q:DS (3.1) BS02 rna ? GO:0003735 ... Q5SHQ4 21378964
    136 4v5q:DT (3.1) BS01 rna ? GO:0003735 ... P60490 21378964
    137 4v5q:DT (3.1) BS02 rna ? GO:0003735 ... P60490 21378964
    138 4v5q:DU (3.1) BS01 rna ? GO:0000027 ... P60491 21378964
    139 4v5q:DV (3.1) BS01 rna ? GO:0003723 ... P60492 21378964
    140 4v5q:DW (3.1) BS01 rna ? GO:0003735 ... Q5SHP3 21378964
    141 4v5q:DX (3.1) BS01 rna ? GO:0000027 ... Q5SHP0 21378964
    142 4v5q:DY (3.1) BS01 rna ? GO:0003723 ... Q5SHP9 21378964
    143 4v5q:DZ (3.1) BS01 rna ? GO:0003723 ... Q5SHZ1 21378964
    144 4v5q:DZ (3.1) BS02 rna ? GO:0003723 ... Q5SHZ1 21378964
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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